View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5561_high_12 (Length: 267)
Name: NF5561_high_12
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5561_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 865837 - 865589
Alignment:
| Q |
1 |
tactaattccatgaccatgtccacaattaacattgtgcaccaatatattggaacatccagtttgtatagatacacaatcatctcctacatgatgaagaaa |
100 |
Q |
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| T |
865837 |
tactaattccatgacctggtccacaattaacattgtgcaccaatatgttagaacaaccagtttgtatagacacacaatcatcccctacatgatgaaaaag |
865738 |
T |
|
| Q |
101 |
tgatacatcatgaaatgtgttcaattcaattcttctaggaaactcatacacattttgtgaaattcttaccacaactaagtgtgctactatagatgagcac |
200 |
Q |
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|||| ||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||| | | | |||| ||| |
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| T |
865737 |
tgatgcattatgaaatgtgttcaattcaattcttctagaaaactcattcaaattttgtgaaattcttaccacaactaagtgtgctgccagatatgaccac |
865638 |
T |
|
| Q |
201 |
atcttgagaattttgtaggtgaattccatctgtgttaggactatcacca |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
865637 |
atcttgagaattttgtaggtgaattccatctgtgttaggactatcacca |
865589 |
T |
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