View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5561_high_13 (Length: 242)
Name: NF5561_high_13
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5561_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 8519372 - 8519602
Alignment:
| Q |
1 |
ttgccaaacaactttcgtgccaccaggtatgcgactagttgtgattgtctttgcgctttttagaatttctgcattgtgttatggagtttcttaaagtcgg |
100 |
Q |
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| T |
8519372 |
ttgccaaacaactttcgtgccaccaggtatgcgactagttgtgattgtctttgcgctttttagaatttctgcattgtgttatggagtttcttaaagtcgg |
8519471 |
T |
|
| Q |
101 |
tggaagttatgttgtcactatagcatcaaacttgtagttgaattgtgactgtgagacacaatggtattgagaagattaaaaatttcaccctttgtttagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8519472 |
tggaagttatgttgtcactatagcatcaaacttgtagttgaattgtgactgtgagacacaatggtattgagaagattaaaaatttcaccctttgtttagg |
8519571 |
T |
|
| Q |
201 |
ccctaaactttattatcacagcgttgatgat |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
8519572 |
ccctaaactttattatcacagcgttgatgat |
8519602 |
T |
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