View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5561_high_6 (Length: 423)
Name: NF5561_high_6
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5561_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 5832032 - 5831617
Alignment:
| Q |
1 |
gcccggcttcttcggtttcagaggacattgtgttagcacctgcagctgcaccttcttctcagtaattttggagagatggtttaaattttccaaaacatta |
100 |
Q |
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| T |
5832032 |
gcccggcttcttcagtttcagaggacattgtgttagcacctgcagctgcaccttcttctctgtaattttagagagatggtgtaaattttccaaaacatta |
5831933 |
T |
|
| Q |
101 |
aatttatatattcctatgtttactatagtagaggatatatagagggaaatatattgatattccttgttattgaatttgttttgattaatgtaataatcaa |
200 |
Q |
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| T |
5831932 |
aatttatatattcctatgtttactatagtagaggatatatagagggaaatatattaat--tccttgttattgaatttgttttgattaatgtaataatcaa |
5831835 |
T |
|
| Q |
201 |
gttgagttgggcacgttaatgtttcatttttatgttatgtactatttcatgttctccaattatcaaattttggaattgtttcttctcttggtattacatt |
300 |
Q |
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| T |
5831834 |
gttgagttgggcatgttaatgtttcatttttatgttatgtactatttcatgttctccaattatcaaattttggaattgtttcttctcttggtatcacatt |
5831735 |
T |
|
| Q |
301 |
tgatatctacagtgaattttgtctcaataagaaaagttacttgttatactttct----ggtgtatattcactctttggttctgcttttttgctctattta |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||| |
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| T |
5831734 |
tgatatctacagtgaattttgtctcaataagaaaagttacttgttatactttctggtgggtgtatattcactctttggttctg-ttttttattctattta |
5831636 |
T |
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| Q |
397 |
atacaaaagggttcatatc |
415 |
Q |
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| T |
5831635 |
atacaaaagggttcatatc |
5831617 |
T |
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