View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5561_low_1 (Length: 559)

Name: NF5561_low_1
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5561_low_1
NF5561_low_1
[»] chr6 (22 HSPs)
chr6 (10-541)||(6473405-6473936)
chr6 (10-531)||(6464618-6465139)
chr6 (49-526)||(6525695-6526170)
chr6 (10-360)||(6462364-6462714)
chr6 (10-360)||(6495958-6496308)
chr6 (13-541)||(6504765-6505296)
chr6 (110-523)||(6527578-6527991)
chr6 (13-204)||(6516812-6517003)
chr6 (57-529)||(6456705-6457177)
chr6 (106-286)||(1842372-1842552)
chr6 (345-526)||(1828258-1828448)
chr6 (353-484)||(1842191-1842322)
chr6 (422-526)||(1839265-1839369)
chr6 (264-529)||(6516481-6516746)
chr6 (180-286)||(1832347-1832453)
chr6 (354-398)||(1822453-1822497)
chr6 (402-535)||(1827361-1827494)
chr6 (427-496)||(1832196-1832265)
chr6 (57-221)||(6521255-6521419)
chr6 (113-160)||(1846173-1846220)
chr6 (218-280)||(1836144-1836206)
chr6 (197-255)||(1847024-1847082)
[»] chr7 (4 HSPs)
chr7 (172-496)||(46382867-46383192)
chr7 (345-529)||(46383634-46383816)
chr7 (39-99)||(3754632-3754692)
chr7 (422-495)||(3754236-3754309)
[»] chr1 (1 HSPs)
chr1 (258-391)||(35244508-35244641)


Alignment Details
Target: chr6 (Bit Score: 508; Significance: 0; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 10 - 541
Target Start/End: Complemental strand, 6473936 - 6473405
Alignment:
Q  10 catcatcaaatctattcaaactttttatattcttcaatccactttcattatcataaattccttgcaatgcatagacaaaacctttccatccttcttcaac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473936 catcatcaaatctattcaaactttttatattcttcaatccactttcattatcataaattccttgcaatgcatagacaaaacctttccatccttcttcaac 6473837  T
Q  110 accttccctttttaaagcaagcaatgtccactccacaagttccttcacataatcaacatctgaaaacaaaacttgagaaataggaatcaatggtaggagc 209  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6473836 accttccctatttaaagcaagcaatgtccactccacaagttccttcacataatcaacatctgaaaacaaaacttcagaaataggaatcaatggtaggagc 6473737  T
Q  210 tgaattccaagcctacattctttccatgcagccggagcaaaccataatccactgtctctcttgttagaccatagaactcccatcatcctattttcttttg 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6473736 tgaattccaagcctacattctttccatgcagccggagcaaaccataatccactgtctctcttgttagaccatagaactcccatcatcctattctcttttg 6473637  T
Q  310 taaaatcttcctcatagagattctctccctcttttacatgccaccacattttagcagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgag 409  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473636 taaaatcttcctcatagagattctctccttcttttacatgccaccacattttagcagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgag 6473537  T
Q  410 ttctgcatcgttatatgccataccgatcaacgctgctgaatagtatgcattcacggcttcactagtactctcttggtttcttccatctgcaaactcggtt 509  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6473536 ttctgcatcgttatatgccataccgatcaacgctgcagaatagtatgcattcacggcttcactagtactctcttggtttcttccatccgcaaactcggtt 6473437  T
Q  510 aaccctccggcccaagaatgcagtttgtaaag 541  Q
    ||||||||||||||||||||||||||||||||    
T  6473436 aaccctccggcccaagaatgcagtttgtaaag 6473405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 10 - 531
Target Start/End: Original strand, 6464618 - 6465139
Alignment:
Q  10 catcatcaaatctattcaaactttttatattcttcaatccactttcattatcataaattccttgcaatgcatagacaaaacctttccatccttcttcaac 109  Q
    |||||||||| | |||||| ||| |||| |||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||||||||||| ||||    
T  6464618 catcatcaaaaccattcaagcttcttatcttcttcaatccactttcattatcataaactccttccaaggcatagacaaaccctttccatccttctccaac 6464717  T
Q  110 accttccctttttaaagcaagcaatgtccactccacaagttccttcacataatcaacatctgaaaacaaaacttgagaaataggaatcaatggtaggagc 209  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||||| ||||||||| |||||| || | || |||||| |||| |||||||| ||||    
T  6464718 accttccctattcaaagcaggcaatgtccactccacaagttccttcacaaaatcaacatttgaaaataagaattcagaaattggaagcaatggtaagagc 6464817  T
Q  210 tgaattccaagcctacattctttccatgcagccggagcaaaccataatccactgtctctcttgttagaccatagaactcccatcatcctattttcttttg 309  Q
    ||||| ||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||| ||| ||||| || | || | |||| ||||| |    
T  6464818 tgaatcccaagcctacattctttccattcaggaggagcaaaccataatccactgtctctcttgttagcccaaagaacaccaaccaccttattctctttcg 6464917  T
Q  310 taaaatcttcctcatagagattctctccctcttttacatgccaccacattttagcagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgag 409  Q
     |||| | || || || | ||| |||||  ||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||| ||   ||   |||    
T  6464918 caaaaacctcgtcgtaaacattatctccaccttttacatgccaccacatttgagctgcatgaatttccaatgatgtaagtgtcgatccaactgcaacgag 6465017  T
Q  410 ttctgcatcgttatatgccataccgatcaacgctgctgaatagtatgcattcacggcttcactagtactctcttggtttcttccatctgcaaactcggtt 509  Q
     |  |  |||  |||||||| ||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| | ||||| |||    
T  6465018 atgagtgtcgccatatgccaaacccatcaaagctgctgaatagtatgcattcacagcttcactagtactctcttgatttcttccatctccgaactcagtt 6465117  T
Q  510 aaccctccggcccaagaatgca 531  Q
    |||||||||||||| |||||||    
T  6465118 aaccctccggcccacgaatgca 6465139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 49 - 526
Target Start/End: Original strand, 6525695 - 6526170
Alignment:
Q  49 cactttcattatcataaattccttgcaatgcatagacaaaacctttccatccttcttcaacaccttccctttttaaagcaagcaatgtccactccacaag 148  Q
    ||||||||||||||||||| |||||||| ||||| ||||| || ||||| || ||||||||||| ||||||||||||||| | |||||||||||||||||    
T  6525695 cactttcattatcataaatcccttgcaaggcataaacaaaccccttccaaccctcttcaacaccatccctttttaaagcaggtaatgtccactccacaag 6525794  T
Q  149 ttccttcacataatcaacatctgaaaacaaaacttgagaaataggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagca 248  Q
    | ||||||||||   |||||| || ||||| |||| |||||| |||| |||||||| ||||||||| ||||||||||||||||||||| |||| ||| ||    
T  6525795 tcccttcacatacataacatcagagaacaagacttcagaaattggaagcaatggtaagagctgaatcccaagcctacattctttccattcagctggacca 6525894  T
Q  249 aaccataatccactgtctctcttgttagaccatagaactcccatcatcctattttcttttgtaaaatcttcctcatagagattctctccctcttttacat 348  Q
    |||||||| ||||||||||| ||||| ||||| || || || || ||| |||| | |||  ||||  ||| |||||| | |||| |||| ||||||||||    
T  6525895 aaccataaaccactgtctcttttgttcgaccaaagtacaccaattatcttattgtttttactaaacactttctcatacatattccctccttcttttacat 6525994  T
Q  349 gccaccacattttagcagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgagttctgcatcgttatatgccataccgatcaacgctgctga 448  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| ||||||||||||||  |||||||| || ||||| ||||| |     
T  6525995 gccaccacattttagcagcaagaatttcaaatgatgcaagtgtcgatgcagtcgctgcgagttctgcatcgtcgtatgccattcccatcaaggctgc-gc 6526093  T
Q  449 atagtatgcattcacggcttcactagtactctcttggtttcttccatctgcaaactcggttaaccctccggcccaaga 526  Q
    ||| || |||||| | |||||||| ||||||||||| ||||||||||| |  || || |||| |||||| ||||||||    
T  6526094 ataataagcattc-cagcttcactggtactctcttgatttcttccatcagtgaattctgttagccctccagcccaaga 6526170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 10 - 360
Target Start/End: Complemental strand, 6462714 - 6462364
Alignment:
Q  10 catcatcaaatctattcaaactttttatattcttcaatccactttcattatcataaattccttgcaatgcatagacaaaacctttccatccttcttcaac 109  Q
    ||||||||||||  || ||| || |||||||||||||| || |||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||||||    
T  6462714 catcatcaaatccttttaaatttcttatattcttcaatgcagtttccttatcataaattccttgtaaagcatatacaaaccctttccatccttcttcaac 6462615  T
Q  110 accttccctttttaaagcaagcaatgtccactccacaagttccttcacataatcaacatctgaaaacaaaacttgagaaataggaatcaatggtaggagc 209  Q
    ||| || ||||| |||||| |||||||||| || ||||||| ||||||||| |||||||| || ||||| |||| ||||||||||| |||||||| ||||    
T  6462614 accatctcttttcaaagcaggcaatgtccattcaacaagttgcttcacatattcaacatcagagaacaatacttcagaaataggaaccaatggtaagagc 6462515  T
Q  210 tgaattccaagcctacattctttccatgcagccggagcaaaccataatccactgtctctcttgttagaccatagaactcccatcatcctattttcttttg 309  Q
    ||||||||||| ||||||||| |  || |||  ||||||||||| | |||||| |||||||||||||||||||||| |||||| ||||| || |||||||    
T  6462514 tgaattccaagtctacattctctatattcaggtggagcaaaccaaagtccactttctctcttgttagaccatagaaatcccatgatcctgttctcttttg 6462415  T
Q  310 taaaatcttcctcatagagattctctccctcttttacatgccaccacattt 360  Q
    |||| |||||  |||| || || ||||| ||||||| ||||||||||||||    
T  6462414 taaactcttctgcatatagtttatctccttcttttatatgccaccacattt 6462364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 10 - 360
Target Start/End: Original strand, 6495958 - 6496308
Alignment:
Q  10 catcatcaaatctattcaaactttttatattcttcaatccactttcattatcataaattccttgcaatgcatagacaaaacctttccatccttcttcaac 109  Q
    ||||||||||||  || ||| || |||||||||||||| || |||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||||||    
T  6495958 catcatcaaatccttttaaatttcttatattcttcaatgcattttccttatcataaattccttgtaaggcatatacaaaccctttccatccttcttcaac 6496057  T
Q  110 accttccctttttaaagcaagcaatgtccactccacaagttccttcacataatcaacatctgaaaacaaaacttgagaaataggaatcaatggtaggagc 209  Q
    ||| || ||||| |||||| |||||| ||| || ||||||| ||||||||| || ||||| || ||||| |||| ||||||||||| |||||||| ||||    
T  6496058 accatctcttttcaaagcaggcaatgcccattcaacaagttgcttcacatattcgacatcagagaacaatacttcagaaataggaagcaatggtaagagc 6496157  T
Q  210 tgaattccaagcctacattctttccatgcagccggagcaaaccataatccactgtctctcttgttagaccatagaactcccatcatcctattttcttttg 309  Q
    |||| ||||| ||||||||||||  || | |  ||||||||||| | |||||| ||||||||||| |||||||||| |||||| |||| |||  ||||||    
T  6496158 tgaactccaaccctacattctttatattccggtggagcaaaccaaagtccactttctctcttgttggaccatagaaatcccatgatccgattcgcttttg 6496257  T
Q  310 taaaatcttcctcatagagattctctccctcttttacatgccaccacattt 360  Q
    |||| |||||  |||| || ||  |||| ||||||| ||||||||||||||    
T  6496258 taaattcttcggcatatagttttcctccttcttttatatgccaccacattt 6496308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 13 - 541
Target Start/End: Original strand, 6504765 - 6505296
Alignment:
Q  13 catcaaatctattcaaactttttatattcttcaatccactttcattatcataaattccttgcaatgcatagacaaaacctttccatccttcttcaacacc 112  Q
    ||||||| | |||||| ||| |||| ||||||||| |||||||||||||||||||||||| ||||| ||| |  || || |||||||||||| |||||||    
T  6504765 catcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgaatataagaatcccttccatccttctccaacacc 6504864  T
Q  113 ---ttccctttttaaagcaagcaatgtccactccacaagttccttcacataatcaacatctgaaaacaaaacttgagaaataggaatcaatggtaggagc 209  Q
       |||||| || |||||| ||||||||||||| ||||| || || |||||||||||||| ||||||||| ||| ||||||||||  ||||||||  |||    
T  6504865 accttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcagaaataggagccaatggtataagc 6504964  T
Q  210 tgaattccaagcctacattctttccatgcagccggagcaaaccataatccactgtctctcttgttagaccatagaactcccatcatcctattttcttttg 309  Q
    ||||||||   ||||  |||| ||||| |||  ||||||||||| | |||||| ||||| || |||  ||| | ||||||||  || ||||| |||||||    
T  6504965 tgaattcctgtcctagcttctctccattcaggtggagcaaaccaaagtccactatctcttttattattccacaaaactcccactattctattctcttttg 6505064  T
Q  310 taaaatcttcctcatagagattctctccctcttttacatgccaccacattttagcagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgag 409  Q
    |||| ||||| ||||| |  ||| |   ||  || ||||||||||||||||| |   ||||||||||||||||||| ||||| ||| || | |     ||    
T  6505065 taaactcttcttcatacaatttcccattcttcttaacatgccaccacattttggttccaagaatttccaatgatgttagtgttgatccaatggacacaag 6505164  T
Q  410 ttctgcatcgttatatgccataccgatcaacgctgctgaatagtatgcattcacggcttcactagtactctcttggtttcttccatctgcaaactcggtt 509  Q
    ||  | |||   |||||| || || ||||| ||||| | ||||||||||||||| |||||||||||||||||||| || |||||||||| ||||||||||    
T  6505165 ttgagaatcaccatatgctattcccatcaatgctgcagcatagtatgcattcacagcttcactagtactctcttgattccttccatctgaaaactcggtt 6505264  T
Q  510 aaccctccggcccaagaatgcagtttgtaaag 541  Q
    | |||||||||||| |||||||  ||||||||    
T  6505265 agccctccggcccacgaatgcaacttgtaaag 6505296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 110 - 523
Target Start/End: Original strand, 6527578 - 6527991
Alignment:
Q  110 accttccctttttaaagcaagcaatgtccactccacaagttccttcacataatcaacatctgaaaacaaaacttgagaaataggaatcaatggtaggagc 209  Q
    ||||||||||||||| ||| | |||||||| || || |||||||||||||| |   |||| ||||||||||||| |||||||||   ||| ||||  |      
T  6527578 accttccctttttaaggcaggtaatgtccattcaactagttccttcacatactttgcatcagaaaacaaaacttcagaaataggcgacaagggtaaaact 6527677  T
Q  210 tgaattccaagcctacattctttccatgcagccggagcaaaccataatccactgtctctcttgttagaccatagaactcccatcatcctattttcttttg 309  Q
    ||||  ||||||||   |||| ||||| |||||||||||||| | |||||||||||||||||||||||||||| ||||||||| |||||||| || ||||    
T  6527678 tgaacaccaagccttgcttctctccattcagccggagcaaacgacaatccactgtctctcttgttagaccataaaactcccatgatcctattctcctttg 6527777  T
Q  310 taaaatcttcctcatagagattctctccctcttttacatgccaccacattttagcagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgag 409  Q
    |||||||||  |||||||| ||  |  ||| ||| |||||||||||||||||  | |||  |||||||||||||| |||||| ||| || | |     ||    
T  6527778 taaaatctttttcatagagcttaccgtcctttttaacatgccaccacattttctctgcacaaatttccaatgatgcaagtgttgatccaatggacacaag 6527877  T
Q  410 ttctgcatcgttatatgccataccgatcaacgctgctgaatagtatgcattcacggcttcactagtactctcttggtttcttccatctgcaaactcggtt 509  Q
    ||  | |||   ||||||||| || ||||| ||||  | |||||||||||| || ||||||||| |   |  ||| || |||||||||||||||||||||    
T  6527878 ttgaggatcaccatatgccattcccatcaatgctgaagcatagtatgcatttacagcttcactacttgccatttgattacttccatctgcaaactcggtt 6527977  T
Q  510 aaccctccggccca 523  Q
    | ||||||||||||    
T  6527978 acccctccggccca 6527991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 6517003 - 6516812
Alignment:
Q  13 catcaaatctattcaaactttttatattcttcaatccactttcattatcataaattccttgcaatgcatagacaaaacctttccatccttcttcaacacc 112  Q
    ||||||| | |||||| ||| |||| ||||||||| |||||||||||||||||||||||| |||||||||   ||| ||  ||||||  | |||| ||||    
T  6517003 catcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgcataccgaaatcccgtccatctgttttcagcacc 6516904  T
Q  113 ttccctttttaaagcaagcaatgtccactccacaagttccttcacataatcaacatctgaaaacaaaacttgagaaataggaatcaatggta 204  Q
    |  | |||| |||| | |||||| |||||| |||||||| ||||||||||||||||| ||||| ||||||| |||||| |||  ||||||||    
T  6516903 taacgttttgaaaggaggcaatgcccactcaacaagttctttcacataatcaacatcagaaaataaaacttcagaaattggacacaatggta 6516812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 57 - 529
Target Start/End: Original strand, 6456705 - 6457177
Alignment:
Q  57 ttatcataaattccttgcaatgcatagacaaaacctttccatccttcttcaacaccttccctttttaaagcaagcaatgtccactccacaagttccttca 156  Q
    ||||||||| | |||| ||  ||||| | |||||||||||| |||||  ||||||||| ||| || |||  | | |||||||| |||||||| ||||| |    
T  6456705 ttatcataagtaccttccatagcatatataaaacctttccacccttcaccaacacctttcctattcaaattaggtaatgtccattccacaagctccttta 6456804  T
Q  157 cataatcaacatctgaaaacaaaacttgagaaataggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccataa 256  Q
    ||||| ||||||| ||||||||  | |  |  ||||| | ||| ||||  |  ||||| || |||||||| ||| |||||  ||| || ||||||||||     
T  6456805 cataaccaacatccgaaaacaatgcctcggtgataggcaacaaaggtaaaacttgaatacctagcctacactctctccattgagcaggcgcaaaccatag 6456904  T
Q  257 tccactgtctctcttgttagaccatagaactcccatcatcctattttcttttgtaaaatcttcctcatagagattctctccctcttttacatgccaccac 356  Q
    |||||| |||||||| |||||||| | ||| | ||  |   | || ||||| | ||| |||||  |||| || || |||||  |||||| ||||||||||    
T  6456905 tccactatctctcttattagaccaaacaacactcactactttgttctctttggaaaattcttcagcataaagtttatctccgccttttatatgccaccac 6457004  T
Q  357 attttagcagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgagttctgcatcgttatatgccataccgatcaacgctgctgaatagtatg 456  Q
    |||| ||| ||| ||||||| | || ||  ||||| ||| |  ||||  | |||| ||  |||   || ||||| || ||||| ||||| | ||||||||    
T  6457005 atttgagctgcatgaatttcaagtgctgctagtgttgatccggtcgcaataagttgtgtgtcgccgtacgccattcccatcaatgctgcagcatagtatg 6457104  T
Q  457 cattcacggcttcactagtactctcttggtttcttccatctgcaaactcggttaaccctccggcccaagaatg 529  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| ||| |||  ||||| |||||||||||    
T  6457105 cattcacagcttcactagtactctcttgatttcttccatctgcaaattcgattagtcctccagcccaagaatg 6457177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 106 - 286
Target Start/End: Complemental strand, 1842552 - 1842372
Alignment:
Q  106 caacaccttccctttttaaagcaag-caatgtccactccacaagttccttcacataatcaacatctgaaaacaaaacttgagaaataggaatcaatggta 204  Q
    ||||||| ||||||| ||||| ||| ||||||||||||||||||| |||||||||| | |||||| ||  |||||| || ||||||||| |  | |||||    
T  1842552 caacaccatccctttctaaagaaaggcaatgtccactccacaagtcccttcacatacttaacatcagaggacaaaatttcagaaatagggagtagtggta 1842453  T
Q  205 ggagctgaattccaagcctacattctttccatgcagccggagcaaaccataatccactgtctctcttgttagaccatagaac 286  Q
     ||||||||| || |||| ||||||||||||  |||| ||| |||||||||  ||| ||||||| ||||||||||| |||||    
T  1842452 agagctgaatgccgagccaacattctttccactcagcaggaccaaaccatagacca-tgtctcttttgttagaccacagaac 1842372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 526
Target Start/End: Complemental strand, 1828448 - 1828258
Alignment:
Q  345 acatgccaccacattttagcagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgagttctgcatcgttatatgccata---------ccga 435  Q
    |||||||||||||||||||||||||||| ||||||||| | |||||| ||||||   |||| || ||| ||||| | |||| |||||         || |    
T  1828448 acatgccaccacattttagcagcaagaacttccaatgacgcaagtgttgatgcaacggctgcgaattccgcatcttcatataccatagtaaccataccaa 1828349  T
Q  436 tcaacgctgctgaatagtatgcattcacggcttcactagtactctcttggtttcttccatctgcaaactcggttaaccctccggcccaaga 526  Q
    |||| ||||| ||||||||||||||||| || |||||||| |||||||| ||||| ||||| || || || |||| |||||||||||||||    
T  1828348 tcaaggctgcggaatagtatgcattcactgcatcactagtgctctcttgatttctaccatcagcgaattctgttagccctccggcccaaga 1828258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 353 - 484
Target Start/End: Complemental strand, 1842322 - 1842191
Alignment:
Q  353 ccacattttagcagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgagttctgcatcgttatatgccataccgatcaacgctgctgaatag 452  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||| | ||||  |||||  |||| |  |||   ||||  ||||| ||||| ||||||    
T  1842322 ccacatttttgcagcaagaatttccaatgatgtaagtgttgatgcaatggctgcaagttcaacatcttcttatattatacgaatcaaggctgcagaatag 1842223  T
Q  453 tatgcattcacggcttcactagtactctcttg 484  Q
    |||||||||||| |||| ||||| ||||||||    
T  1842222 tatgcattcacgacttcgctagtgctctcttg 1842191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 422 - 526
Target Start/End: Complemental strand, 1839369 - 1839265
Alignment:
Q  422 atatgccataccgatcaacgctgctgaatagtatgcattcacggcttcactagtactctcttggtttcttccatctgcaaactcggttaaccctccggcc 521  Q
    |||| ||||||| ||||| ||||  ||||||||||||||||| | ||||||||| || ||||| ||||| ||||| || ||||| |||| ||||||||||    
T  1839369 atattccataccaatcaaagctgaagaatagtatgcattcactgattcactagtgctatcttgatttctaccatcagcgaactctgttagccctccggcc 1839270  T
Q  522 caaga 526  Q
    |||||    
T  1839269 caaga 1839265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 529
Target Start/End: Complemental strand, 6516746 - 6516481
Alignment:
Q  264 tctctcttgttagaccatagaactcccatcatcctattttcttttgtaaaatcttcctcatagagattctctccctcttttacatgccaccacattttag 363  Q
    |||||||| |||||||  | || |||||  |||||||| ||||||||||| ||||| ||||| |  ||| |   || ||| ||||||||||||||||| |    
T  6516746 tctctcttattagacctcaaaattcccactatcctattctcttttgtaaactcttcatcatacaatttcccattctttttaacatgccaccacattttgg 6516647  T
Q  364 cagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgagttctgcatcgttatatgccataccgatcaacgctgctgaatagtatgcattcac 463  Q
       ||||||||||||||||||| ||||| |||||| | |     ||||  | |||   ||||||||| || || || ||||| | |||||||||||||||    
T  6516646 ttccaagaatttccaatgatgttagtgttgatgcaattgacacaagttgaggatcaccatatgccattcccattaaggctgcagcatagtatgcattcac 6516547  T
Q  464 ggcttcactagtactctcttggtttcttccatctgcaaactcggttaaccctccggcccaagaatg 529  Q
     |||||||||||||||||||| |  ||||||| | || | | ||||| |||| ||||||| |||||    
T  6516546 agcttcactagtactctcttgataccttccatgttcagagttggttagccctacggcccacgaatg 6516481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 180 - 286
Target Start/End: Complemental strand, 1832453 - 1832347
Alignment:
Q  180 acttgagaaataggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccataatccactgtctctcttgttagacc 279  Q
    |||| ||| |||||||  ||||||| ||||||||| || |||| ||||||||||||  |||| ||| |||||||||  ||||||||||| |||| |||||    
T  1832453 acttaagagataggaagaaatggtaagagctgaatgccgagccgacattctttccactcagcaggaccaaaccatagaccactgtctcttttgtaagacc 1832354  T
Q  280 atagaac 286  Q
    | |||||    
T  1832353 aaagaac 1832347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 1822497 - 1822453
Alignment:
Q  354 cacattttagcagcaagaatttccaatgatgtaagtgtcgatgca 398  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||    
T  1822497 cacattttagcagaaagaatttccaatgatgtaagtgttgatgca 1822453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 402 - 535
Target Start/End: Complemental strand, 1827494 - 1827361
Alignment:
Q  402 gctgtgagttctgcatcgttatatgccataccgatcaacgctgctgaatagtatgcattcacggcttcactagtactctcttggtttcttccatctgcaa 501  Q
    |||| |||||| ||||| | |||| |||||   ||||| ||||| ||||| ||||||||||  ||||||||||  |||||||| ||||||||||| |  |    
T  1827494 gctgcgagttcagcatcttcatataccatagtaatcaaggctgcagaataatatgcattcattgcttcactagcgctctcttgatttcttccatcagtga 1827395  T
Q  502 actcggttaaccctccggcccaagaatgcagttt 535  Q
    | || |||| |||||| |||||||| || |||||    
T  1827394 attcagttagccctccagcccaagagtgtagttt 1827361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 427 - 496
Target Start/End: Complemental strand, 1832265 - 1832196
Alignment:
Q  427 ccataccgatcaacgctgctgaatagtatgcattcacggcttcactagtactctcttggtttcttccatc 496  Q
    |||||||  |||| ||||| ||||| ||||||||||  |||||||||||  |||||||||||||||||||    
T  1832265 ccataccagtcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatc 1832196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 6521419 - 6521255
Alignment:
Q  57 ttatcataaattccttgcaatgcatagacaaaacctttccatccttcttcaacaccttccctttttaaagcaagcaatgtccactccacaagttccttca 156  Q
    |||||||||||||| |  || ||||| ||||| || |||||||||||  ||||||| || ||||  ||| || ||||   ||| |||||||  |||||||    
T  6521419 ttatcataaattccctttaaagcatacacaaatcccttccatccttcaccaacaccatcactttccaaatcaggcaacacccattccacaacatccttca 6521320  T
Q  157 cataatcaacatctgaaaacaaaacttgagaaataggaatcaatggtaggagctgaattccaagc 221  Q
    || | |||||||| |||||||| | ||  |||||||||| ||||||||  | |||||| ||||||    
T  6521319 caaattcaacatcagaaaacaacatttctgaaataggaagcaatggtaaaacctgaatgccaagc 6521255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 1846220 - 1846173
Alignment:
Q  113 ttccctttttaaagcaagcaatgtccactccacaagttccttcacata 160  Q
    ||||||||| |||||||| |||||| ||||||||||| ||||||||||    
T  1846220 ttcccttttcaaagcaagtaatgtcgactccacaagtcccttcacata 1846173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 1836206 - 1836144
Alignment:
Q  218 aagcctacattctttccatgcagccggagcaaaccataatccactgtctctcttgttagacca 280  Q
    ||||| ||||||||||||  |||| ||| |||||||||  ||||||||||| |||||||||||    
T  1836206 aagccgacattctttccactcagctggaccaaaccatagaccactgtctcttttgttagacca 1836144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 1847082 - 1847024
Alignment:
Q  197 caatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccata 255  Q
    |||||||| |||||||||||| |||| ||||||||||||   ||||||| |||||||||    
T  1847082 caatggtaagagctgaattccgagccgacattctttccactgagccggaccaaaccata 1847024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 172 - 496
Target Start/End: Original strand, 46382867 - 46383192
Alignment:
Q  172 aaaacaaaacttgagaaataggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccataatccactgtctctctt 271  Q
    ||||||| |||| ||||||||||| |||||||| ||||||||| ||||| |||| ||| |||||   ||| ||| |||||||||  ||||||||||| ||    
T  46382867 aaaacaagacttcagaaataggaaacaatggtaagagctgaatcccaaggctacgttccttccacttagctggaccaaaccatagaccactgtctctttt 46382966  T
Q  272 gttagaccatagaactcccatcatcctattttcttttgtaaaatcttcctcatagagattctctccctcttttacatgccaccacattttagcagcaaga 371  Q
    ||||||||| || |  || || | | |||| ||||   | ||  |||  ||||| | |||| ||    |||| |||||||||||||||||||||||||||    
T  46382967 gttagaccaaagtataccaattaccttattctcttcactgaacactttatcatacatattcacttttcctttcacatgccaccacattttagcagcaaga 46383066  T
Q  372 atttccaa-tgatgtaagtgtcgatgcattcgctgtgagttctgcatcgttatatgccataccgatcaacgctgctgaatagtatgcattcacggcttca 470  Q
    |||||||| || |||||||||||| ||| | |||  |||||||||||||| |||||| |||| |||||| ||||| ||||||||||||||||  | ||||    
T  46383067 atttccaaatggtgtaagtgtcgaagcagttgctacgagttctgcatcgtcatatgcaatactgatcaaagctgcagaatagtatgcattcaaagtttca 46383166  T
Q  471 ctagtactctcttggtttcttccatc 496  Q
    |||||||||| ||| |||||||||||    
T  46383167 ctagtactcttttgatttcttccatc 46383192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 529
Target Start/End: Original strand, 46383634 - 46383816
Alignment:
Q  345 acatgccaccacattttagcagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgagttctgcatcgttatatgccataccgatcaacgctg 444  Q
    |||||||||||||||||  ||| ||| || |||||   |||||||||||||||| ||||   ||||||||||| || |||| |||||  |||||| ||||    
T  46383634 acatgccaccacatttt--cagaaaggatatccaactgtgtaagtgtcgatgcagtcgccacgagttctgcattgtcatatcccatattgatcaaggctg 46383731  T
Q  445 ctgaatagtatgcattcacggcttcactagtactctcttggtttcttccatctgcaaactcggttaaccctccggcccaagaatg 529  Q
    | |||| |||||||||||   ||||||||| ||||||| | ||||||| ||| |  || || |||| ||| || |||||||||||    
T  46383732 cagaattgtatgcattcaaaacttcactagcactctctcgatttcttcaatcagtgaattcagttagcccaccagcccaagaatg 46383816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 3754692 - 3754632
Alignment:
Q  39 ttcttcaatccactttcattatcataaattccttgcaatgcatagacaaaacctttccatc 99  Q
    ||||||||| || |||| |||||||||||||||||||| | ||||| ||| ||||||||||    
T  3754692 ttcttcaatgcattttctttatcataaattccttgcaaagaatagataaaccctttccatc 3754632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 495
Target Start/End: Complemental strand, 3754309 - 3754236
Alignment:
Q  422 atatgccataccgatcaacgctgctgaatagtatgcattcacggcttcactagtactctcttggtttcttccat 495  Q
    |||||| | ||| ||||| ||||||||||| ||||||||||| |||||||| | ||| ||||| || |||||||    
T  3754309 atatgctagacctatcaatgctgctgaataatatgcattcactgcttcacttgaactttcttgattccttccat 3754236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 391
Target Start/End: Complemental strand, 35244641 - 35244508
Alignment:
Q  258 ccactgtctctcttgttagaccatagaactcccatcatcctattttcttttgtaaaatcttcctcatagagattctctccctcttttacatgccaccaca 357  Q
    ||||| || ||||| |||||||| | ||||||||| |||||||| ||||||||||||||||  ||||| | |||  | | || ||| |||||||||||||    
T  35244641 ccactatccctcttattagaccacaaaactcccatgatcctattctcttttgtaaaatctttttcatacatatttccactctttttaacatgccaccaca 35244542  T
Q  358 ttttagcagcaagaatttccaatgatgtaagtgt 391  Q
     ||||||||||  |||||||||||||| ||||||    
T  35244541 atttagcagcacaaatttccaatgatgcaagtgt 35244508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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