View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5561_low_11 (Length: 277)
Name: NF5561_low_11
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5561_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 30769572 - 30769825
Alignment:
| Q |
16 |
caccattcctcataacatcatccaacaaaactatcctgaatcggtcgagtctttatcatcgccaccaccacagccaccaccacgatcacgcgttaatgaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30769572 |
caccattcctcataacatcatccaacaaaactatcctgaatcggtcgagtctttatcatcgccaccaccacagccaccaccacgatcacgcgttaatgaa |
30769671 |
T |
|
| Q |
116 |
acaatgaacgacgattccttccctaatgtccccggaggcaagcttcggctcatgtgcagctacggaggccacataatgccgcgccctcacgataagtctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30769672 |
acaatgaacgacgattccttccctaatgtccccggaggcaagcttcggctaatgtgcagctacggaggccacataatgccgcgccctcatgataagtctc |
30769771 |
T |
|
| Q |
216 |
tatgttatgtaggcggtgacaccagaatcgtggtcgtggatcgcagttcttctc |
269 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30769772 |
tatgttatgtaggtggtgacaccagaatcgtggtcgtggatcgcagttcttctc |
30769825 |
T |
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