View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5561_low_3 (Length: 520)
Name: NF5561_low_3
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5561_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 10 - 476
Target Start/End: Complemental strand, 1238747 - 1238280
Alignment:
| Q |
10 |
attatactttgtctgaaatttgtatgaagtttagtaaactaaaggtttcttagagaattattactactctaannnnnnnn-ataaaagttgaatgttgga |
108 |
Q |
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| T |
1238747 |
attatactttgtctgaaatttgtatgaagtttagtaaactaaaggtttcttagagaattattactactctaatttttttttataaaagttgaatgttgga |
1238648 |
T |
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| Q |
109 |
agagcccattcaccttttacttggtataaagagaagtgtgaacaaataaaaagaagtttaatcttgtttattttacaaagagacggacattttttatgtc |
208 |
Q |
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| T |
1238647 |
agagcccattcaccttttacttggtataaagagaagtgtgaacaaataaaaagaagtttaatcttgtttattttacaaagagacggacattttttatgtc |
1238548 |
T |
|
| Q |
209 |
atacttctttcttgatagatggtcttccttcttaacgaagaaagtgacattttttattgaccacgactttttgagtaaccactatttttaactcacactt |
308 |
Q |
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| T |
1238547 |
atacttctttcttgatagatggtcttccttcttaacaaagaaagtgacattttttattgaccacgactttttgagtaaccactatttttaactcacactt |
1238448 |
T |
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| Q |
309 |
actaaaattcaaattagtcaagaatcaactaatgcttatcatcaattatttacattgtaaatttagtttgaaaacatggtttttctttttaaatttgttc |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
1238447 |
actaaaattcaaattagtcaagaatcaactaatgcttatcatcaattatttactttgtaaatttagtttgaaaacatagtttttctttttaaacttgttc |
1238348 |
T |
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| Q |
409 |
ttgaaacaggtttaagaccaacgtaaatggttaagaccagctgaaatcccaggtgatgaataccgtgc |
476 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1238347 |
ttgaaacaggtttaagaccaacgtaaatggttaagaccagctgaaatcccaggtgatcaataccgtgc |
1238280 |
T |
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