View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5561_low_5 (Length: 492)
Name: NF5561_low_5
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5561_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 15 - 486
Target Start/End: Original strand, 39466370 - 39466843
Alignment:
| Q |
15 |
acaacatgcatgcaatcttagattatt-gtttgattttgattcttctggaactgtttattacttcatcattcactttcacctacaaagtttaaaccttta |
113 |
Q |
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| T |
39466370 |
acaacatgcatgcaatcttagattatttgtttgattttgattcttctggaactgtttattacttcatcattcactttcacctacaaagtttaaaccttta |
39466469 |
T |
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| Q |
114 |
cccctgtactgtttatttacattgctattgttcttagtgtttagtttataatttcattttgattccggaactgtagtgtacaacttcatcattctgtttc |
213 |
Q |
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| T |
39466470 |
cccctgtactgtttatttacattgctattgttctcagagtttagtttatagtttcattttgattccggaactgtagtgtacaacttcatcattctgtttc |
39466569 |
T |
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| Q |
214 |
acctaggaatttgaaacctttacccctatagttttatatttttcaattcaagaaccttattgttcatttctttgattttc-gnnnnnnncccagtttctg |
312 |
Q |
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| T |
39466570 |
accaaggaatttgaaacctttacacctatagttttatatttttcaattcaagaaccttattgttcatttctttgattttcattttttttcccagtttctg |
39466669 |
T |
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| Q |
313 |
tagttaaatcatggattctgaggcttctcacaagctaaagttttgtggtgatgatgatgggaacttgcatgttaaatggctcacttcttgtgacnnnnnn |
412 |
Q |
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| T |
39466670 |
tagttaaatcatggattctgaggcttctcacaagctaaaattttgtggtgatgatgatgggaacttgcatgttaaatggctcacttcttgtgaagaaaaa |
39466769 |
T |
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| Q |
413 |
ncatcccattcagatgtgacaaaacatgtttcttgtcaagactttgaatctgaagattatgatgttgatgatgt |
486 |
Q |
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| T |
39466770 |
acatcccattcagatgtgacaaaacatgtatcttgtcaagactttgaatctgaagattatgatgttgatgatgt |
39466843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 361 - 486
Target Start/End: Complemental strand, 39479647 - 39479520
Alignment:
| Q |
361 |
tgatgatgatgggaacttgcatgttaaatggctcacttcttgtgacnnnnnnncatcccattcagatgtgacaa---aacatgtttcttgtcaagacttt |
457 |
Q |
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| T |
39479647 |
tgatgatgatgggaacttaaatgttaaatggatcaattcatgtgacaaaaaagcatcccattcagatgtgatgagggaacctgtttcttgtca-gacttt |
39479549 |
T |
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| Q |
458 |
gaatctgaagattatgatgttgatgatgt |
486 |
Q |
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| T |
39479548 |
gaatctgaacatgatgatgttgatgatgt |
39479520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 370
Target Start/End: Original strand, 39214481 - 39214548
Alignment:
| Q |
303 |
ccagtttctgtagttaaatcatggattctgaggcttctcacaagctaaagttttgtggtgatgatgat |
370 |
Q |
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| T |
39214481 |
ccagtttctgtagttgaatgatgggtaatgaggcttttgataagctaaaattttgtggtgatgatgat |
39214548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 359
Target Start/End: Original strand, 39151412 - 39151468
Alignment:
| Q |
303 |
ccagtttctgtagttaaatcatggattctgaggcttctcacaagctaaagttttgtg |
359 |
Q |
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| T |
39151412 |
ccagtttctgtagttgaatgatggattttgaagcttctaataagctaaaattttgtg |
39151468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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