View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5561_low_7 (Length: 359)
Name: NF5561_low_7
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5561_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 32778259 - 32778426
Alignment:
| Q |
16 |
atcataataaatgactaactatatatgtaaccattaaagaacactaaatgagttttaagcagaagatctaaaacctgaatctctgaaaattagttttaag |
115 |
Q |
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| T |
32778259 |
atcataataaatgactaactatatatgtaaccattaaagaacactaaatgagttttaagcagaagatctaaaacctga-tctctgaaaattagttttaag |
32778357 |
T |
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| Q |
116 |
cagaagatctaaacgagtttactaaattataatatttgtttatttgtcttttaaaaaattgttatgtca |
184 |
Q |
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| T |
32778358 |
cagaagatctaaacgagtttactaaattataatatttgtttatttgtcttttaaaaaattgttatgtca |
32778426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 212 - 344
Target Start/End: Original strand, 32778458 - 32778590
Alignment:
| Q |
212 |
tagtgatcatatctgattattctatcacattatcaggtgaaaaacgatcaataaagggggaataccacatgtaagataatctaactctaattctttgatt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32778458 |
tagtgatcatatctgattattctatcacattatcaggtgaaaaactctcaataaagggggaataccacatgtaagataatctaactctaattctttgatt |
32778557 |
T |
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| Q |
312 |
aacaattctaattctatccattcttagatatgt |
344 |
Q |
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| T |
32778558 |
aacaattctaattctatccattcttagatatgt |
32778590 |
T |
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