View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5561_low_8 (Length: 331)
Name: NF5561_low_8
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5561_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 52711803 - 52712102
Alignment:
| Q |
16 |
ataggagagggcggagtatcggtggtgagttgtttaataataatggtggttcttaacctcttccaaatccaatgcttttttgttctacaagtgttggcac |
115 |
Q |
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| T |
52711803 |
ataggagagggcggagtatcggtggtgagttgtttaataataatggtggttcttaccctcttccaaatccaatgcttttttgttctacaagtgtgggcac |
52711902 |
T |
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| Q |
116 |
aaaaaagaaagatagcattggtggtggaaatggtagtgg-acctaatatgttttgttgaataattttgtaacacaagtataggaaatttgaaatgcaggt |
214 |
Q |
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| T |
52711903 |
aaaaaagaaagatagcattggtggtggaaatggtagtgggacctaatatgttttgttgaataattttgtaacacaagtataggaaatttgaaatgcaggt |
52712002 |
T |
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| Q |
215 |
ttgatagagaacatgagtgatagtcgcagagaaagagagtttgaaattgaggaagaaacaaagtctccatatattagccagaagaaggtggacttggaag |
314 |
Q |
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| T |
52712003 |
ttgatggagaacatgagtgatagtcgaagagaaagagactttgaaattgaggaagaaacaaagtctccatatattagccagaagaaggtggacttggaag |
52712102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 52717123 - 52717260
Alignment:
| Q |
22 |
gagggcggagtatcggtggtgagttgtttaataataatggtggttcttaacctcttccaaatccaatgcttttttgttctacaagtgttggcacaaaaaa |
121 |
Q |
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| T |
52717123 |
gagggaggagtatgagtggtgagttgttcaata---atggtggttcttaccctcctccaaatcctatgctttctggttctacaagtgctggcacaaagaa |
52717219 |
T |
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| Q |
122 |
gaaagatagcattggtggtggaaatggtagtggacctaata |
162 |
Q |
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| T |
52717220 |
gaaagatagcatgggcggtggaagtggtaatggacctaata |
52717260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 314
Target Start/End: Original strand, 52717627 - 52717699
Alignment:
| Q |
242 |
agagaaagagagtttgaaattgaggaagaaacaaagtctccatatattagccagaagaaggtggacttggaag |
314 |
Q |
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| T |
52717627 |
agagaaagggatgttgaaattgaggaagcagtaaagtctccatatattagccagaagaagatggacttggaag |
52717699 |
T |
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