View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5561_low_9 (Length: 303)
Name: NF5561_low_9
Description: NF5561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5561_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 47481564 - 47481291
Alignment:
| Q |
19 |
gttacaaactgggctttggtttcgatgaaccatgatacacaatcttgcatggatcctaatgttatggaggctaaggttgttgtgagttcttgtggacatg |
118 |
Q |
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| T |
47481564 |
gttacaaactgggctttggtttcgatgaaccatgatacacaatcttgcatggatcctaatgttatggaagctaaggttgttgtgagttcttgtggacatg |
47481465 |
T |
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| Q |
119 |
atggtccttttggtgctactggtgttaagaggttgaagagtattggcatgattgatcatgttcctggaatgaaagcacttgatatgaatactgctgaaga |
218 |
Q |
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| T |
47481464 |
atggtccttttggtgctactggtgttaagaggttgaagagtattggcatgattgatcatgttcctggaatgaaagcacttgatatgaatactgctgaaga |
47481365 |
T |
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| Q |
219 |
tgctattgttcgtcttacaagggaagttgttcctggtatgattattactggtatggaagttgctgaaattgatg |
292 |
Q |
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| T |
47481364 |
tgctattgttcgtcttacaagggaagttgttcctggtatgattgttactggtatggaagttgctgaaattgatg |
47481291 |
T |
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Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 292
Target Start/End: Complemental strand, 31407456 - 31407189
Alignment:
| Q |
25 |
aactgggctttggtttcgatgaaccatgatacacaatcttgcatggatcctaatgttatggaggctaaggttgttgtgagttcttgtggacatgatggtc |
124 |
Q |
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| T |
31407456 |
aactgggctttggtttcaatgaaccatgacactcaatcctgcatggacccaaatgttatggagtctaaagttgtggttagctcttgtggccatgatggtc |
31407357 |
T |
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| Q |
125 |
cttttggtgctactggtgttaagaggttgaagagtattggcatgattgatcatgttcctggaatgaaagcacttgatatgaatactgctgaagatgctat |
224 |
Q |
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| T |
31407356 |
cttttggagccactggtgtgaagaggctcaagagtattggtttgattgataccgtgcctggaatgaaggccctcgacatgaacactgccgaggatgctat |
31407257 |
T |
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| Q |
225 |
tgttcgtcttacaagggaagttgttcctggtatgattattactggtatggaagttgctgaaattgatg |
292 |
Q |
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| T |
31407256 |
tgttaggctcactagggaggttgttcctggaatgatagtaactggcatggaggttgctgagattgatg |
31407189 |
T |
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