View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5562-Insertion-2 (Length: 1030)
Name: NF5562-Insertion-2
Description: NF5562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5562-Insertion-2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 656 - 1028
Target Start/End: Original strand, 10072523 - 10072899
Alignment:
| Q |
656 |
tgtcatattgattgtattaagtcatatagatgttataatcactgttttgtatatgtgttgtagtatcccttgtatttcagtaaatttgaatttttctttt |
755 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10072523 |
tgtcatattgattgtattaagtcatgtagatgttataatatttgttttgtatatgtgttgcagtatcccttgtatttcagtaaatatgaatttttctttt |
10072622 |
T |
|
| Q |
756 |
ctttatacttgcacatttaattagcata--actagttttttctcttggtgtttgggagtttcagttatggagtttgttgatatctgctggagaacaagat |
853 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10072623 |
ctttatacttgcacatttaattagcatataactagttttttctcttggtgttttggagtttcagttatggagtttgttgatatctgctggagaacaagat |
10072722 |
T |
|
| Q |
854 |
gttgcgtttcttaaacggattgaaacaactgtgtcttgctgtggtaaattggtgtaatactgaattgtcgagccc-gagcagccgcctccgcatggtggt |
952 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10072723 |
gttgcgtttcttaaacggattgaaacaactgtgtcttgctgtggtaaattggtgtaatactgaattgtcgagcccggagcagccgcctccgcatggtggt |
10072822 |
T |
|
| Q |
953 |
tttaataatgcagaagaaatttcgaatgaaacagtttgtatgttattatcattgc-atacttcttttctatttatga |
1028 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10072823 |
tttaataatgcagaagaaatttcgaatgaaacagtttgtatgttattatcattgcaatacttcttttctatttatga |
10072899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 248 - 423
Target Start/End: Original strand, 10072221 - 10072397
Alignment:
| Q |
248 |
aaaggtaagcatccaccaaaactatatatttaataacgttatctcaatttggaatttatatacattcttactgttaaattagttaatggtgtttacctta |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10072221 |
aaaggtaagcatccaccaaaactatatatttaataacgttatctcaatttggaatttgtatacattcttgttgttaaattagttaatggtgtttacctta |
10072320 |
T |
|
| Q |
348 |
tataagctgaatggaattccaaacatgtctagttcttgttccatgattgacttgccctcattttcctg-gtattgtt |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
10072321 |
tataagctgaatggaattccaaacatgtctagtccttgttccatgattgacttgccatcattttcctgtgtattgtt |
10072397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 10071978 - 10072157
Alignment:
| Q |
8 |
tatctatttgaattcaagcacccgcatttgtagcacagtatctactagttagtagaaagnnnnnnnnnt---tcaattttcttcattcctgaaatcataa |
104 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10071978 |
tatctatttgaattcaagcacccacatttgtagcacagtatctactagttagtagaaagaaagaaaaaaaactcaattttcttcattcctgaaatcataa |
10072077 |
T |
|
| Q |
105 |
caagaaattaaaactcaattttctacatttagtagtatctatttgatcacaatgtagcaaaagtggaatgaaatttaata |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10072078 |
caagaaattaaaactcaattttctacatttagtagtatctatttgatcacaatgtagcaaaagtggaatgaaatttaata |
10072157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 697 - 836
Target Start/End: Original strand, 10062381 - 10062519
Alignment:
| Q |
697 |
ctgttttgtatatgtgttgtagtatcccttgtatttcagtaaatttgaatttttcttttctttatacttgcacatttaattagcataactagttttttct |
796 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| | |
|
|
| T |
10062381 |
ctgttttgtatatgtgttttagcatcccttgtatttcagcaaatttgaatttttcttttctttatatttgcacatttaattagctttactagtttttt-t |
10062479 |
T |
|
| Q |
797 |
cttggtgtttgggagtttcagttatggagtttgttgatat |
836 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| |||||| |
|
|
| T |
10062480 |
cttggtgtttgggagtttcaggtattgagtttgctgatat |
10062519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 791 - 912
Target Start/End: Original strand, 10029843 - 10029964
Alignment:
| Q |
791 |
ttttctcttggtgtttgggagtttcagttatggagtttgttgatatctgctggagaacaagatgttgcgtttcttaaacggattgaaacaactgtgtctt |
890 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | |||| || |
|
|
| T |
10029843 |
ttttctcttggtgtttgggagtttcagttacgtagtttgttgatatctgctggagaacaagatgttgcgttgcttagacggattgaaaaatttgtgcgtt |
10029942 |
T |
|
| Q |
891 |
gctgtggtaaattggtgtaata |
912 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
10029943 |
ggtgtggtaaattggtgtaata |
10029964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 791 - 908
Target Start/End: Original strand, 10051756 - 10051873
Alignment:
| Q |
791 |
ttttctcttggtgtttgggagtttcagttatggagtttgttgatatctgctggagaacaagatgttgcgtttcttaaacggattgaaacaactgtgtctt |
890 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||| |||| ||||||||||| | |||| || |
|
|
| T |
10051756 |
ttttctcttggtgtttgggagtttcagttacgtagtttgttgatatgtgctggagaacaagatgttgcgttgcttagacggattgaaaaatttgtgcgtt |
10051855 |
T |
|
| Q |
891 |
gctgtggtaaattggtgt |
908 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
10051856 |
ggtgtggtaaattggtgt |
10051873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 629 - 714
Target Start/End: Original strand, 10029728 - 10029815
Alignment:
| Q |
629 |
tattgatcaagtatagatcctagtgttt--gtcatattgattgtattaagtcatatagatgttataatcactgttttgtatatgtgtt |
714 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||| |
|
|
| T |
10029728 |
tattgatcaagtatagatcctagtgtttatgtcatattgattgtattaagtaatatagatgttataatctatgttttgtatatatgtt |
10029815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 629 - 714
Target Start/End: Original strand, 10051641 - 10051728
Alignment:
| Q |
629 |
tattgatcaagtatagatcctagtgtttgt--catattgattgtattaagtcatatagatgttataatcactgttttgtatatgtgtt |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||| |||| |
|
|
| T |
10051641 |
tattgatcaagtatagatcctagtgtttgtgtcatattgattgtattaagtaatatagatgttataatctatgttttgtatatatgtt |
10051728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 497 - 584
Target Start/End: Original strand, 10072396 - 10072483
Alignment:
| Q |
497 |
tttaatgtcgaactaaaataggatggtttaactggttgaactgtgaaccgacgttgtttactgtttgattatttgaacatttcgatca |
584 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| || ||||| |
|
|
| T |
10072396 |
tttaatttcgaaccaaaataggatggtttaaccggttgaaccgtgaaccgacattgtttactgtttgattatttgaacagtttgatca |
10072483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University