View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5562_high_2 (Length: 267)
Name: NF5562_high_2
Description: NF5562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5562_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 6309890 - 6309686
Alignment:
| Q |
1 |
aagggaggtaggtgtttagttgaaaaccagaggatgtttttgttatgcagtgatacatcagggaggttagtgtattttttccaaattaaattccaaaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||| | ||||||||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
6309890 |
aagggaggtaggtgtttagttgaaaactagaggagatttttgttatgcagtgaaacattaaggaggttagtgtaatttctccaaatcaaattccaaaaaa |
6309791 |
T |
|
| Q |
101 |
tactttaaaattaaaacgaactataatatcatttatggtttaatttagcatttacaacttgattcaaaatgtctaaattcaaattaacaaccggtgacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| |
|
|
| T |
6309790 |
tactttaaaattaaaacgaactataatatcatttatgctttaatttagcatttacaacttgattcaaaatgtttaaattcaaattaacaacccgtggcta |
6309691 |
T |
|
| Q |
201 |
aagtt |
205 |
Q |
| |
|
||||| |
|
|
| T |
6309690 |
aagtt |
6309686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University