View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5562_high_3 (Length: 246)
Name: NF5562_high_3
Description: NF5562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5562_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 6309886 - 6310114
Alignment:
| Q |
1 |
cccttagggttaacacagttaattatgtgttaattttggatgtatacttttatggcttggcaattgtaacatgcaactttccttcttcatttactgctac |
100 |
Q |
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| T |
6309886 |
cccttggggttaacacagttaattatatgttaattttggatgtatacttttttggcttggcaattgtaacattcaactttccttcttcatttactgctac |
6309985 |
T |
|
| Q |
101 |
tgttgccttactctattttatatctaatggctttccttcttcagtgcaaggttcgcatgaaccattgtagttggcttagctcaattttaaacgtctcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6309986 |
tgttgccttactctattttatatctaatggctttccttcttcagtgcaaggttcgcatgaaccattgtagttggcttagctcaattttaaacgtctcaat |
6310085 |
T |
|
| Q |
201 |
tgatcactcttctgttcgattaatatttg |
229 |
Q |
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||||||||||| |||||| |||||||||| |
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| T |
6310086 |
tgatcactcttatgttcggttaatatttg |
6310114 |
T |
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