View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5562_low_1 (Length: 535)

Name: NF5562_low_1
Description: NF5562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5562_low_1
NF5562_low_1
[»] chr1 (7 HSPs)
chr1 (22-518)||(9829638-9830135)
chr1 (22-185)||(9756176-9756339)
chr1 (22-182)||(9708796-9708956)
chr1 (175-250)||(9708979-9709054)
chr1 (106-185)||(9814362-9814441)
chr1 (283-356)||(9709040-9709113)
chr1 (198-234)||(9814580-9814616)


Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 22 - 518
Target Start/End: Original strand, 9829638 - 9830135
Alignment:
Q  22 ctttcagactcactcataacgacattagaatttcgttttctcttggtatttgcagaaaataagatatcttcaccaaagtccaaattttcctcattgtttt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9829638 ctttcagactcactcataacgacattagaatttcgttttctcttggtatttgcagaaaataagatatcttcaccaaagtccaaattttcctcattgtttt 9829737  T
Q  122 gagaatgattgttgtccaagttctttccttttacttctccaaaacatgttgaaagtgaaatgttgtgagaaagagcaggttcatcgtcgctatcagtgat 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9829738 gagaatgattgttgtccaagttctttccttttacttctccaaaacatgttgaaagtgaaatgttgtgagaaagagcaggttcatcgtcgctatcagtgat 9829837  T
Q  222 aacaattacatttacaggactagattttggatcgtcactacccgtgatatcaataacatct-cagaactagattttgcaccaatgggtgtagaagatgct 320  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||| | |||||||||||||||||| |||||||||||||||||||    
T  9829838 aacaattacatttacaggactagattttggatcgtcactatccgtgatatcaaagacatttacagaactagattttgcacgaatgggtgtagaagatgct 9829937  T
Q  321 tccatcgttttgctgagactctctttagtttcaaatttcaactattatagctttcttccctgtaggcattcatgaaaagcagttgactaaagaaattcaa 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9829938 tccatcgttttgctgagactctctttagtttcaaatttcaactattatagctttcttccctgtaggcattcatgaaaaacagttgactaaagaaattcaa 9830037  T
Q  421 aagttatttaccaaaaacgtaaataagttctccctcaggtcctaaatataagagacaagtgcgtcagcaaaaattgatgcattcgatacatcaatttt 518  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  9830038 aagttatttaccaaaaacgtaaataagttctccctccggtcctaaatataagagacaagtgcgtcaacaaaaattgatgtattcgatacatcaatttt 9830135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 9756176 - 9756339
Alignment:
Q  22 ctttcagactcactcataacgacattagaatttcgttttctcttggtatttgcagaaaataagatatcttcaccaaagtccaaattttcctcattgtttt 121  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||      
T  9756176 ctttcagactcactcataacgacgttagaatttcgttttctcttggtatttgcaaaaaataagatatcttcaccaaagtccaaattttcctcattgttag 9756275  T
Q  122 gagaatgattgttgtccaagttctttccttttacttctccaaaacatgttgaaagtgaaatgtt 185  Q
    ||||||||||| |||||||||||||||||||||||| |  ||||||||||||||| ||||||||    
T  9756276 gagaatgattgctgtccaagttctttccttttacttttgaaaaacatgttgaaagagaaatgtt 9756339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 9708796 - 9708956
Alignment:
Q  22 ctttcagactcactcataacgacattagaatttcgttttctcttggtatttgcagaaaataagatatcttcaccaaagtccaaattttcctcattgtttt 121  Q
    ||||| ||||| ||||||||||||||  ||   ||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||| | ||||||||    
T  9708796 ctttctgactcgctcataacgacattgcaaggccgtttcctcttggtatttgcagtaaataagatatcttcaccaaagtccaacttttctttattgtttt 9708895  T
Q  122 gagaatgattgttgtccaagttctttccttttacttctccaaaacatgttgaaagtgaaat 182  Q
    | | |||||||||||||||||||||||||| | |||   |||||||||||| |||||||||    
T  9708896 gggcatgattgttgtccaagttctttccttcttctttggcaaaacatgttgcaagtgaaat 9708956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 9708979 - 9709054
Alignment:
Q  175 agtgaaatgttgtgagaaagagcaggttcatcgtcgctatcagtgataacaattacatttacaggactagattttg 250  Q
    |||||||| |||||||||| | |||||||||||||||| ||| |||||  |||||||||||||| |||||||||||    
T  9708979 agtgaaatattgtgagaaatatcaggttcatcgtcgctgtcaatgatatgaattacatttacagaactagattttg 9709054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 9814362 - 9814441
Alignment:
Q  106 ttttcctcattgttttgagaatgattgttgtccaagttctttccttttacttctccaaaacatgttgaaagtgaaatgtt 185  Q
    ||||| ||||||||||  |  |||||||||||||||||||||||||   ||||| |||||||||||| ||| ||||||||    
T  9814362 ttttcatcattgttttcggcttgattgttgtccaagttctttccttagtcttcttcaaaacatgttgtaagagaaatgtt 9814441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 9709040 - 9709113
Alignment:
Q  283 cagaactagattttgcaccaatgggtgtagaagatgcttccatcgttttgctgagactctctttagtttcaaat 356  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||  |||||| |  || ||||| ||||||||||    
T  9709040 cagaactagattttgcaccagtgggtgtagtagatgctgccatatttttgccgcaacactcttcagtttcaaat 9709113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 9814580 - 9814616
Alignment:
Q  198 aggttcatcgtcgctatcagtgataacaattacattt 234  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  9814580 aggttcatcgtcgctatcaatgatatcaattacattt 9814616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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