View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5562_low_2 (Length: 399)
Name: NF5562_low_2
Description: NF5562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5562_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 388
Target Start/End: Complemental strand, 48702629 - 48702257
Alignment:
| Q |
16 |
atgaggaagtgcatgccatcatgggaccaataacaacaatggaagcaaattttgtgattcaactaggagacaaagctcacgtacccattgtaacattttc |
115 |
Q |
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| T |
48702629 |
atgaggaagtgcatgccatcatgggaccaataacaacaatggaagcaaattttgtgattcaactaggagacaaagctcacgtgcccattgtaacattttc |
48702530 |
T |
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| Q |
116 |
agcaacaagcccttcacttgcatcacttcaaagttcatacttctttcaaatatcacaaactgattcagctcaagctaaagcaatcacctcaattatccaa |
215 |
Q |
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| T |
48702529 |
agcaacaagcccttcacttgcatcacttcaaagttcatacttctttcaaatatcacaaaatgattcaactcaagttaaagcaatcacctcaattatccaa |
48702430 |
T |
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| Q |
216 |
gcttttggatggaaacaagtggttcccatttatgtagacaatagttttggtgaaggacttattccttatttaactagtgttctacaacaagcctatatac |
315 |
Q |
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| T |
48702429 |
gcttttggatggaaacaagtggttcccatttatgtagacaatagttttggtgaaggacttattccttatttaactagtgttctacaacaagcctatatac |
48702330 |
T |
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| Q |
316 |
aagttccctatctaagtgcaatttctctttcagccaatgatgatgctatcactcaagaactttataaaataat |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48702329 |
aagttccctatctaagtgcaatttctctttcagccaatgatgatgctatcactcaagaactttataaaataat |
48702257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 22 - 388
Target Start/End: Complemental strand, 48714729 - 48714363
Alignment:
| Q |
22 |
aagtgcatgccatcatgggaccaataacaacaatggaagcaaattttgtgattcaactaggagacaaagctcacgtacccattgtaacattttcagcaac |
121 |
Q |
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| T |
48714729 |
aagtgcaagccataatggggccaataacaacaatagaaacaaatttcgtgattcaactaggagacaaagctcacgtgcccattgtaacattttcagcaac |
48714630 |
T |
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| Q |
122 |
aagcccttcacttgcatcacttcaaagttcatacttctttcaaatatcacaaactgattcagctcaagctaaagcaatcacctcaattatccaagctttt |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
48714629 |
aagcccttcacttgcatcacttcaaagttcatacttctttcaaatatcacaaaatgattcaactcaagttaaagcaatcacctcaattatccaagctttt |
48714530 |
T |
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| Q |
222 |
ggatggaaacaagtggttcccatttatgtagacaatagttttggtgaaggacttattccttatttaactagtgttctacaacaagcctatatacaagttc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48714529 |
ggatggaaacaagtggttcccatttatgtagacaatagttttggtgaaggacttattccttatttaactagtgttctacaacaagcctatatacaagttc |
48714430 |
T |
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| Q |
322 |
cctatctaagtgcaatttctctttcagccaatgatgatgctatcactcaagaactttataaaataat |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48714429 |
cctatctaagtgcaatttctctttcagccaatgatgatgctatcactcaagaactttataaaataat |
48714363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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