View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5562_low_6 (Length: 239)
Name: NF5562_low_6
Description: NF5562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5562_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 41706054 - 41706261
Alignment:
| Q |
18 |
tttataacagcttgattattctataattatacctcaaatattgtaaccaaggttgcgctacccgtgtagatgctatactattttacaagctacaatgggt |
117 |
Q |
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| T |
41706054 |
tttataacagcttgattattctataattatacctcaaatattgtaaccaaagttgcgctacccgtgtagatgctatactattttacaagctacaatgggt |
41706153 |
T |
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| Q |
118 |
ttctatccattttgcagtgatcgccccagatggcttcaccatttcctccttctttttagggtacaccttcaccctttcacaaagcttgcgtatcaatgat |
217 |
Q |
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| T |
41706154 |
ttctatccattttgcagtgatcgccccagatggcttcaccatttcctccttctttttagggtacaccttcaccctttcacaaagcttgcgtatcaatgat |
41706253 |
T |
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| Q |
218 |
gcatggtt |
225 |
Q |
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|||||||| |
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| T |
41706254 |
gcatggtt |
41706261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 39 - 225
Target Start/End: Original strand, 41715878 - 41716064
Alignment:
| Q |
39 |
tataattatacctcaaatattgtaaccaaggttgcgctacccgtgtagatgctatactattttacaagctacaatgggtttctatccattttgcagtgat |
138 |
Q |
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| T |
41715878 |
tataataatacatcaaatattgtaaccaaggtttcactaccattgtggatgcaatacaattttacaagttacaatgcgtttctatccattttggggtgat |
41715977 |
T |
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| Q |
139 |
cgccccagatggcttcaccatttcctccttctttttagggtacaccttcaccctttcacaaagcttgcgtatcaatgatgcatggtt |
225 |
Q |
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| T |
41715978 |
cgccccaaatggattcaccatttcctcattctctttagggtacaccctctccctttcacaaagcatttgtatcaatgatgcatggtt |
41716064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 41656191 - 41656246
Alignment:
| Q |
149 |
ggcttcaccatttcctccttctttttagggtacaccttcaccctttcacaaagctt |
204 |
Q |
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| T |
41656191 |
ggcttcacaatttcctcattcttttcatggtacaccctcaccctttcacaaagctt |
41656246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 223
Target Start/End: Complemental strand, 2440948 - 2440842
Alignment:
| Q |
117 |
tttctatccattttgcagtgatcgccccagatggcttcaccatttcctccttctttttagggtacaccttcaccctttcacaaagcttgcgtatcaatga |
216 |
Q |
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| T |
2440948 |
tttctatccatttcgcggtgattggcccagatggcttcacaatttcctcattcttttccgggtacaccctcacccattcacaaagcttgttgatcaatga |
2440849 |
T |
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| Q |
217 |
tgcatgg |
223 |
Q |
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||||||| |
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| T |
2440848 |
tgcatgg |
2440842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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