View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5563-Insertion-2 (Length: 492)
Name: NF5563-Insertion-2
Description: NF5563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5563-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 437
Target Start/End: Complemental strand, 25084140 - 25083722
Alignment:
| Q |
8 |
atttccctcttatatcataatatacat------cccttgaaagtaaaaacttaataaagtaataagtaaaaacataaatacatatgcctactcataactt |
101 |
Q |
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| T |
25084140 |
atttccctcttatatcataatatacattctcatcccttgaaagtaaaaacttaataatgtaataagtaaaaacataaatacatatgcctactcataactt |
25084041 |
T |
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| Q |
102 |
cttcaacaatatattttatgaccggtcttatttatgttattggaaaaacaaaaagttacgtactccctccgtttccttcttagtgagtgttcttgagtgt |
201 |
Q |
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| T |
25084040 |
cttcaacaatatattttatgacaggtattatttatgttattggtaaaaaaaattgttacatactccctccttttccttcttagtgagtgttcttgagtgt |
25083941 |
T |
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| Q |
202 |
atattgaggattgttcaatataataccaaattttttatattctatgctatgaatattgaaaattcaagttgtgaaggtactaaaagaattggatattgag |
301 |
Q |
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| T |
25083940 |
atattgaggattgttca--ataataccaaattttttatattctaggctatgaatattgaaaattcaagttgtgaaggtactaaaacaattggatattgag |
25083843 |
T |
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| Q |
302 |
aaaggtttctaattttgaggattcttgggtgtttcatacatataaaatagctcattgaatgggtgtagattcaccgactcaaggaatttctttacaaaca |
401 |
Q |
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| T |
25083842 |
aaaggtttctaattttgaggattcttgggtgtttcatacatataaaatagct---------------gatttaccgactcaaggaatttctttacaaaca |
25083758 |
T |
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| Q |
402 |
ttcgtacaagctataaagagaacatgcaatttatga |
437 |
Q |
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| T |
25083757 |
ttcgtacaagctataaagagaacatgcaatttatga |
25083722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 439 - 491
Target Start/End: Complemental strand, 25083684 - 25083632
Alignment:
| Q |
439 |
aaaccaatataaattatgatgtatattcttacatagtttttcatttttcacaa |
491 |
Q |
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| T |
25083684 |
aaaccaatataaattatgatgtatattcttacatagttttttatttttcacaa |
25083632 |
T |
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