View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5563-Insertion-3 (Length: 360)
Name: NF5563-Insertion-3
Description: NF5563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5563-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 10 - 360
Target Start/End: Complemental strand, 16993611 - 16993258
Alignment:
| Q |
10 |
aagttgtgttgtgttactaaattttcttcatgtctttctcaggaatgctgaatggggtagcagtttggagcttggtaacaaaagattcaattctgacaaa |
109 |
Q |
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| T |
16993611 |
aagttgtgttgtgttactaaattttcttcatgtctttctcaggaatgctgaatggggtagcagtttggagcttggtaacaaaagattcaattctgacaaa |
16993512 |
T |
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| Q |
110 |
gtttctcctgaagttcaaccaccttcacctcctatgcatttgtttcaaaattatctttctaaggggaatatgtttccttgtcaagtcattgaagtaagtt |
209 |
Q |
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| T |
16993511 |
gtctctcctgaagttcaaccaccttcacctcctatgcatttgtttcaaaatgatatttctaaggggtatatgtttccttgtcaagtcattgaagtaagtt |
16993412 |
T |
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| Q |
210 |
gaaacaaaacgattttgaaatgcttctaa-nnnnnnnnnnnnnngggaatttccaatgttctttgtttttgtatgtagattagcttagctagtttaacac |
308 |
Q |
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| T |
16993411 |
gaaacaaaacgattttgaaatgcttttaattttttattttttttgggaatttccaatgttctttgtttttgtatgtagattagcttagctagtttaacac |
16993312 |
T |
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| Q |
309 |
--agcaccgacacttctaataacatacgttgacgtgtcaatgtcgagtaggaac |
360 |
Q |
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| T |
16993311 |
ggagcactgacacttctaataacatacgttgacgtgtcaatgttgagtaggaac |
16993258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 4526784 - 4526686
Alignment:
| Q |
115 |
tcctgaagttcaaccaccttcacctcctatgcatttgtttcaaaattatctttctaaggggaatatgtttccttgtcaagtcattgaagtaagttgaaa |
213 |
Q |
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| T |
4526784 |
tcctgaagttccaccacctccacctcctatgcatttgtttcaaaatgttctttccaaggggaatatgttccctcgtcaaatcattgaagtaagttgaaa |
4526686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 4526916 - 4526827
Alignment:
| Q |
16 |
tgttgtgttactaaattttcttcatgtctttctcaggaatgctgaatggggtagcagtttggagcttggtaacaaaagattcaattctga |
105 |
Q |
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| T |
4526916 |
tgttgtgttactaaattctcttcatatattttccagggattccaaatggggtagcactttggagctgagtaacaaaaggttcaattctga |
4526827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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