View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5563-Insertion-4 (Length: 351)
Name: NF5563-Insertion-4
Description: NF5563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5563-Insertion-4 |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 149 - 351
Target Start/End: Original strand, 46552855 - 46553057
Alignment:
| Q |
149 |
atatattttgaagccataatttgtgacattctatgcttgttttcttgcttgtttagatagtccttgattatatgctttcattttcttgtcagtttcatta |
248 |
Q |
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| T |
46552855 |
atatattttgaagccataatttgtgacattctatgcttgttttcttgcttgtttagatagtccttgattatatgctttcattttcttgtcagtttcatta |
46552954 |
T |
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| Q |
249 |
aatcaatttcatgcatatatttgttttattttttgcggtaaaaaaggtgctcaaagattttccttctgttcaaatgccacttgagtggctaatccaattg |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46552955 |
aatcaatttcatgcatatatttgttttattttttgcggtaaaaaaggtgctcgaagattttccttctgttcaaatgccacttgagtggctaatccaattg |
46553054 |
T |
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| Q |
349 |
gtt |
351 |
Q |
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||| |
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| T |
46553055 |
gtt |
46553057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 46552676 - 46552821
Alignment:
| Q |
8 |
gtgaggtcaattaattgtgcattattttgctttgaatcaattcactagttttttatgcattgaagtctttatctaactgattttggactcttttcttact |
107 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46552676 |
gtgaggtcaatcaattgtgcattattttgctttgaatcaattcactagttttttatgcattgaagtctttatctaactgattttggactcttttcttact |
46552775 |
T |
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| Q |
108 |
aagatgttaagcaacttcgtactttgtagaaaatatttatgatata |
153 |
Q |
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| T |
46552776 |
aagatgttaagcaacttcgtactttgtagaaaatatttatgatata |
46552821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 149 - 351
Target Start/End: Original strand, 1029274 - 1029477
Alignment:
| Q |
149 |
atatattttgaagccataatttgtgacattctatgcttgttttcttgcttgtttagatagtccttgattatat-gctttcattttcttgtcagtttcatt |
247 |
Q |
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| T |
1029274 |
atatattttgaagccataatctgtgacattctatgctcgttttcttgcttgtttagatagtccttgattatattgctttcattttcttgtcagtttcatt |
1029373 |
T |
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| Q |
248 |
aaatcaatttcatgcatatatttgttttattttttgcggtaaaaaaggtgctcaaagattttccttctgttcaaatgccacttgagtggctaatccaatt |
347 |
Q |
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| T |
1029374 |
aaatcaattttatgcatatatttgttttattttttgcggtaaaaaaggtgctcgaagattttccttctgttcaaatgccacttgagtggctaatccaatt |
1029473 |
T |
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| Q |
348 |
ggtt |
351 |
Q |
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|||| |
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| T |
1029474 |
ggtt |
1029477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 1029082 - 1029235
Alignment:
| Q |
8 |
gtgaggtcaattaattgtgcattattttgctttgaatcaattcactagttttttatgcattgaagtctttatctaactgattttggactcttttcttact |
107 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1029082 |
gtgaggtcaatcaattgtgcattattttgctttgaatcaattcactagttttttatgcattgaagtctttatctaactgattttggactcttttcttact |
1029181 |
T |
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| Q |
108 |
aagatgttaagcaacttcgtactttgtagaaaatatttatgatatattttgaag |
161 |
Q |
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| T |
1029182 |
aagatgttaagcaacttcaaactttgtagaaaatatttatgatatattttgaag |
1029235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 189 - 351
Target Start/End: Original strand, 40831833 - 40831996
Alignment:
| Q |
189 |
tttcttgcttgtttagatagtccttgattatatgctttcattttcttgtcagtttcattaaatcaatttcatgcatatatttgttttattttttgcggt- |
287 |
Q |
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||||||| |||||||||| || |||||||||||||||||||||||| | || ||||||||||||||| ||||||||| |||| | |||||| ||| |
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| T |
40831833 |
tttcttgtctgtttagatattcgttgattatatgctttcattttcttctttgtatcattaaatcaattttatgcatatacatgttctgtttttttgggtt |
40831932 |
T |
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| Q |
288 |
aaaaaaggtgctcaaagattttccttctgttcaaatgccacttgagtggctaatccaattggtt |
351 |
Q |
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| T |
40831933 |
aaaaaaggtactgaaggattttccttctgtacaaatgccacttgagtggctaatccaattggtt |
40831996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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