View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5563_high_3 (Length: 250)
Name: NF5563_high_3
Description: NF5563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5563_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 46552462 - 46552220
Alignment:
| Q |
1 |
cacaaaagtttccaaaaaggagtccagttttttaaaatgaggataggtataattaatttttcataaattaacaccaacatccataaacatgaacaataca |
100 |
Q |
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| T |
46552462 |
cacaaaagtttccaaaaaggagtccagttttttaaaatgaggataggtataattaatttttcataaattaacaccaacatccataaacatgaacaataca |
46552363 |
T |
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| Q |
101 |
tccagtttatataaaagtgaacaat-nnnnnnnggcattccaaagcatacaggtccattatcatcctacatgttagaaagagtaggaacaattacaatgt |
199 |
Q |
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| T |
46552362 |
tccagtttatataaaagtgaacaataaaaaaaaggcattccaaagcatacaggtccattatcatcctacatgttagaaagagtaggaacaattacaatgt |
46552263 |
T |
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| Q |
200 |
taatcaaaacataggtgaaagatagatgtttgccagtattatc |
242 |
Q |
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| T |
46552262 |
taatcaaaacataggtgaaagatagatgtttgccagcattatc |
46552220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 1028824 - 1028780
Alignment:
| Q |
191 |
ttacaatgttaatcaaaacataggtgaaagatagatgtttgccag |
235 |
Q |
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| T |
1028824 |
ttacaatgttaatcaaaacataggtgaaagatagatgtttgccag |
1028780 |
T |
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