View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5563_high_4 (Length: 228)

Name: NF5563_high_4
Description: NF5563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5563_high_4
NF5563_high_4
[»] chr1 (1 HSPs)
chr1 (7-228)||(46552459-46552680)
[»] chr7 (2 HSPs)
chr7 (7-221)||(1028872-1029086)
chr7 (7-228)||(40831582-40831803)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 46552680 - 46552459
Alignment:
Q  7 ctcacctcaagaacagttctcctctccttctggttgtattggtacaggtcatctcttccttcaggtgaagaaaaatactgaagtctttccttctcatgtt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46552680 ctcacctcaagaacagttctcctctccttctggttgtattggtacaggtcatctcttccttcaggtgaagaaaaatactgaagtctttccttctcatgtt 46552581  T
Q  107 cagctgttgcaaaaaagctcataacctgagacatcaaattgttgctaggttagcttttaatgaggaaaatacaggtatattaaaagcatgtttatagaac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46552580 cagctgttgcaaaaaagctcataacctgagacatcaaattgttgctaggttagcttttaatgaggaaaatacaggtatattaaaagcatgtttatagaac 46552481  T
Q  207 cgttcattcatgtagaaccaca 228  Q
      ||||||||||||||||||||    
T  46552480 tattcattcatgtagaaccaca 46552459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 1029086 - 1028872
Alignment:
Q  7 ctcacctcaagaacagttctcctctccttctggttgtattggtacaggtcatctcttccttcaggtgaagaaaaatactgaagtctttccttctcatgtt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1029086 ctcacctcaagaacagttctcctctccttctggttgtattggtacaggtcatctcttccttcaggtgaagaaaaatactgaagtctttccttctcatgtt 1028987  T
Q  107 cagctgttgcaaaaaagctcataacctgagacatcaaattgttgctaggttagcttttaatgaggaaaatacaggtatattaaaagcatgtttatagaac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1028986 cagctgttgcaaaaaagctcataacctgagacatcaaattgttgctaagttagcttttaatgaggaaaatacaggtatattaaaagcatgtttatagaac 1028887  T
Q  207 cgttcattcatgtag 221  Q
      |||||||||||||    
T  1028886 tcttcattcatgtag 1028872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 40831803 - 40831582
Alignment:
Q  7 ctcacctcaagaacagttctcctctccttctggttgtattggtacaggtcatctcttccttcaggtgaagaaaaatactgaagtctttccttctcatgtt 106  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||| |||||||||    
T  40831803 ctcacctcaagaacagttctcctctctttctggttgtattggtacagatcatctcttccttcaggtgaagcaaaatactcaagtctttccctctcatgtt 40831704  T
Q  107 cagctgttgcaaaaaagctcataacctgagacatcaaattgttgctaggttagcttttaatgaggaaaatacaggtatattaaaagcatgtttatagaac 206  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| |||  || ||| |||||||| | |||||||||||||    
T  40831703 cagctgttgcaaaaaacctcataacctgagacatcaaatttttgctaagttagcttttaatgacgaagttaaaggaatattaaacggatgtttatagaac 40831604  T
Q  207 cgttcattcatgtagaaccaca 228  Q
      || ||||||| |||||||||    
T  40831603 tttttattcatgcagaaccaca 40831582  T

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