View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5564-Insertion-1 (Length: 1044)
Name: NF5564-Insertion-1
Description: NF5564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5564-Insertion-1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 660; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 204 - 1038
Target Start/End: Complemental strand, 41572279 - 41571454
Alignment:
| Q |
204 |
atctgagccctttgtaattctgtttgttatctagccgcgggtttttgtgtgcttcttgcgcacacacgtcaagtgaataaaatttgcagtttctaaaaaa |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41572279 |
atctgagccctttgtaattctgtttgttatctagccgcgggttttcgtgtgcttcttgcgcacacacgtcaagtgaataaaatttgcagtttctaaaaaa |
41572180 |
T |
|
| Q |
304 |
tataatattaaatccaccattttgcccttcaaatcaataccgctgagacattttggtactcaaatttactaagtgaggtctatgtttgaaaccgcgggaa |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
41572179 |
tataatattaaatccaccattttgcccttcaaatcaataccgctaagacagtttggtactcaaatttactaagtgagttctatgcttgaaaccgcgggaa |
41572080 |
T |
|
| Q |
404 |
gcaacaaatgttaacttctcattttcaggtcaaaaagtttcatggacgcgcgactgtggtgaaaagaattggaaccaaacagtctcgacaacttaatctc |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
41572079 |
gcaacaaatgttaacttctcattttcaggtcaaaaaatctcatggatgcgcgactgtggtgaaaagaagtggaaccaaacagtctcgacagcttaatctc |
41571980 |
T |
|
| Q |
504 |
tcaaattaaaaaatatcgatgaaaatagtcnnnnnnngaactagcaccgtaattttaaaagttttagtttgtcctaatgcatcctgagattattcaaagc |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41571979 |
tcaaattaaaaaatatcgatgaaaatagtctttttttgaactagcaccataattttaaaagttttagtttgtcctaatgcatc--gagattattcaaagc |
41571882 |
T |
|
| Q |
604 |
aatatataagtctttcattaattttaatagctagtttcataacaattttcaagaacaaaaatgttagtttactcccaacatgttgtgaagctctatgctg |
703 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41571881 |
aatatataagtctttcattaattttaatagctattttcataacaattttcaagaacaaaaatgttagtttactcccaacatgttgtgaagctctatgctg |
41571782 |
T |
|
| Q |
704 |
gaatccaacaagaagaaccaaatagaattctacccttccaaccttgtagcatccaattttcattcacctcaaacagaaaatcactattatatgcatcatc |
803 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41571781 |
gaatccaacaagaagaaccaaatagaattctacccttccaaccttgtagcatccaattttcattcacctcaaacagaaaatcactattatatgcatcatc |
41571682 |
T |
|
| Q |
804 |
tctcaacttacacttcaatttatctataacatgcttatccaatttcaaagacttaaaacccatttcccatgtgcctaaaatgccattgcctaatatgtct |
903 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41571681 |
tctcaacttacacttcaatttatctataatctgcttatccaatttcaaagactt-aaacccatttcccatgtgcctaaaatgccattgcct-atatgtct |
41571584 |
T |
|
| Q |
904 |
ctgggcctctcaaccctatcacaacctttcacaaggctataacatttcgttatatcccttccccaaaactcttcctcaaacatcaacctattagggatcc |
1003 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||| ||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
41571583 |
ct-ggcctctcaaccctatcacaacc-ttcacaa-gctataaca-ttcattatatccttcccccaaaactcttcctcaaacatcaacctatta-ggatcc |
41571489 |
T |
|
| Q |
1004 |
tcacgttcacca-tgttgttatcaagccatatcaaa |
1038 |
Q |
| |
|
||||||||| || ||||||||||||| ||||||||| |
|
|
| T |
41571488 |
tcacgttcaacattgttgttatcaag-catatcaaa |
41571454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 310 - 1029
Target Start/End: Complemental strand, 41584583 - 41583879
Alignment:
| Q |
310 |
attaaatccaccattttgcccttcaaatcaataccgctgagacattttggtactcaaatttactaagtgaggtctatgtttgaaaccgcgggaagcaaca |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || ||| ||||||||||||||||||||||||||| |
|
|
| T |
41584583 |
attaaatccaccattttgcccttcaaatcaataccgctgagacattttcgtactcaaattaaaaaa---aggcctatgtttgaaaccgcgggaagcaaca |
41584487 |
T |
|
| Q |
410 |
aatgttaacttctcattttcaggtcaaaaagtttcatggacgcgcgactgtggtgaaaagaattggaaccaaacagtctcgacaacttaatctctcaaat |
509 |
Q |
| |
|
||| ||||||||||||||||| |||||| || | |||||||||||| |||||||||||||| |||||||||||||||| |||||||||| || |
|
|
| T |
41584486 |
aatattaacttctcattttcacatcaaaaggtcttatggacgcgcgattgtggtgaaaagaagtggaaccaaacagtctagacaacttaa--------at |
41584395 |
T |
|
| Q |
510 |
taaaaaatatcgatgaaaatagtcnnnnnnn-gaactagcaccgtaattttaaaagttttagtttgtcctaatgcatcctgagattattcaaagcaatat |
608 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41584394 |
taaaaaatatcgatgaaaatagtctttttcttgaactagcaccataattttaaaggttttagtttgtcctaatgcatcctgggattattcaaagcaatat |
41584295 |
T |
|
| Q |
609 |
ataagtctttcattaattttaatagctagtttcataacaattttcaagaacaaaaatgttagtttactcccaacatgttgtgaagctctatgctggaatc |
708 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
41584294 |
ataagtctttcattaattttaatagctagtttcataacaattttcaagaacgaaaatgttaatttactcccaacatgttgtgaaggtctatgctggaacc |
41584195 |
T |
|
| Q |
709 |
caacaagaagaaccaaatagaattctacccttccaaccttgtagcatccaattttcattcacctcaaacagaaaatcactattatatgcatcatctctca |
808 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| |
|
|
| T |
41584194 |
caacatgaagaaccaaatagaattctacccttccaaccttgtagcatccaattttcattcacctcaaataaaaaatcactattatatgcatcatttctca |
41584095 |
T |
|
| Q |
809 |
acttacacttcaatttatctataacatgcttatccaatttc-aaagacttaaaacccatttcccatgtgcctaaaatgccattgcctaatatgtctctgg |
907 |
Q |
| |
|
|| ||| ||||||||||||||||| ||||||| ||||||| |||||| | |||||||||| | ||||||||| ||||||| ||||| ||||||||| | |
|
|
| T |
41584094 |
acctacccttcaatttatctataatctgcttattcaatttcaaaagacct-aaacccatttactatgtgcctagaatgccaatgcct-gtatgtctct-g |
41583998 |
T |
|
| Q |
908 |
gcctctcaaccctatcacaacctttcacaaggctataacatttcgttatatcccttccccaaaactcttcctcaaacatcaacctattagggatcctcac |
1007 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||| ||| |||||||| | ||||||||| |||||||||||||||||||| || |||||||||| |
|
|
| T |
41583997 |
gcctctcaaccctatcacaacc-ttcacaa-gctataaca-ttcattatatccttcccccaaaacacttcctcaaacatcaacctaata-ggatcctcac |
41583902 |
T |
|
| Q |
1008 |
gttcacca-tgttgttatcaagc |
1029 |
Q |
| |
|
||||| || |||||| ||||||| |
|
|
| T |
41583901 |
gttcaacattgttgtgatcaagc |
41583879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 653 - 1038
Target Start/End: Complemental strand, 41590780 - 41590402
Alignment:
| Q |
653 |
caagaacaaaaatgttagtttactcccaacatgttgtgaagctctatgctggaatccaacaagaagaaccaaatagaattctacccttccaaccttgtag |
752 |
Q |
| |
|
|||| ||| |||||||| |||||||||| | ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41590780 |
caagcacagaaatgttaatttactcccacctagttgtgaaggtctatgttggaatccaacaagaagaaccaaatagaattctacccttccaaccttgtag |
41590681 |
T |
|
| Q |
753 |
catccaattttcattcacctcaaacagaaaatcactattatatgcatcatctctcaacttacacttcaatttatctataacatgcttatccaatttcaaa |
852 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
41590680 |
catccaattttcattcacctcaaacagaaaatcactattatatgcatcatctctcaacttacacttcaatttatttataatctgcttatccaatttcaaa |
41590581 |
T |
|
| Q |
853 |
gacttaaaacccatttcccatgtgcctaaaatgccattgcctaatatgtctctgggcctctcaaccctatcacaacctttcacaaggctataacatttcg |
952 |
Q |
| |
|
||| | |||||||||||||||||||||| ||||||| ||| | |||||||||| ||||||||||||||||||||||| ||||||| ||||||||| ||| |
|
|
| T |
41590580 |
gacct-aaacccatttcccatgtgcctagaatgccaatgcat-atatgtctct-ggcctctcaaccctatcacaacc-ttcacaa-gctataaca-ttca |
41590487 |
T |
|
| Q |
953 |
ttatatcccttccccaaaactcttcctcaaacatcaacctattagggatcctcacgttcacca-tgttgttatcaagccatatcaaa |
1038 |
Q |
| |
|
||||||| | |||||||| || ||||||||||||||||| | ||||||||||||||| || |||||| |||||| ||||||||| |
|
|
| T |
41590486 |
ttatatcattcccccaaaaaactacctcaaacatcaaccta-aaaggatcctcacgttcaacattgttgtaatcaag-catatcaaa |
41590402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 645 - 1038
Target Start/End: Complemental strand, 41558128 - 41557742
Alignment:
| Q |
645 |
acaattttcaagaacaaaaatgttagtttactcccaacatgttgtgaagctctatgctggaatccaacaagaagaaccaaatagaattctacccttccaa |
744 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41558128 |
acaattttcaagaacaaaaatgttgatttactcccaacatattgtgaaggtctatgctggaacccaacatgaagaaccaaatagaattctacccttccaa |
41558029 |
T |
|
| Q |
745 |
ccttgtagcatccaattttcattcacctcaaacagaaaatcactattatatgcatcatctctcaacttacacttcaatttatctataacatgcttatcca |
844 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||| || |
|
|
| T |
41558028 |
ccttgtagcatccaattttcattcacctcaaataaaaaatcactattatatgcatcatttctcaacctacccttcaatttatctataatctgcttattca |
41557929 |
T |
|
| Q |
845 |
atttcaaagacttaaaacccatttcccatgtgcctaaaatgccattgcctaatatgtctctgggcctctcaaccctatcacaacctttcacaaggctata |
944 |
Q |
| |
|
||||||||||| | |||||||||||| ||||||||| ||||||| ||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
41557928 |
atttcaaagacct-aaacccatttcctatgtgcctagaatgccaatgcct-gtatgtctct-ggcctctcaaccctatcacaacc-ttcacaa-gctata |
41557834 |
T |
|
| Q |
945 |
acatttcgttatatcccttccccaaaactcttcctcaaacatcaacctattagggatcctcacgttcacca-tgttgttatcaagccatatcaaa |
1038 |
Q |
| |
|
||| ||| ||||||| | ||||||| ||| ||||||||||||||||| | ||||||||||||||| || ||||||||||||| ||||||||| |
|
|
| T |
41557833 |
aca-ttcattatatctttcccccaaacgtctccctcaaacatcaacctaaca-ggatcctcacgttcaacattgttgttatcaag-catatcaaa |
41557742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 401 - 641
Target Start/End: Complemental strand, 41591099 - 41590859
Alignment:
| Q |
401 |
gaagcaacaaatgttaacttctcattttcaggtcaaaaagtttcatggacgcgcgactgtggtgaaaagaattggaaccaaacagtctcgacaacttaat |
500 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||||||| || | ||||||||||||| ||||||||||| |||||||||||| ||| |||| ||| | |
|
|
| T |
41591099 |
gaagcaacaaatgttagcttcttattttcacgtcaaaaggtcttgaggacgcgcgactgcggtgaaaagaagtggaaccaaacactctaaacaa-ttagt |
41591001 |
T |
|
| Q |
501 |
ctctcaaattaaaaaatatcgatgaaaatagtcnnnnnnn-gaactagcaccgtaattttaaaagttttagtttgtcctaatgcatcctgagattattca |
599 |
Q |
| |
|
|||| || ||||||||||||| ||||| ||||| ||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
41591000 |
ctcttaatttaaaaaatatcgttgaaattagtctttttcttgaactagcaccataattttaaaggttttagtttgtcttaatgcatcctgagattgttca |
41590901 |
T |
|
| Q |
600 |
aagcaatatataagtctttcattaattttaatagctagtttc |
641 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41590900 |
aagcaatatataagtctttcattaattttaatagctagtttc |
41590859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 41572464 - 41572399
Alignment:
| Q |
8 |
gtatcctgtgtatattgcggtgacctgtgctggttttgtgcagttttgcatatggcagcctcatta |
73 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41572464 |
gtatgctgtgtatattgcggtgacctgtgctggttttgtgcagttttgcatatggcagccttatta |
41572399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 7e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 204 - 303
Target Start/End: Original strand, 27754232 - 27754330
Alignment:
| Q |
204 |
atctgagccctttgtaattctgtttgttatctagccgcg-ggtttttgtgtgcttcttgcgcacacacgtcaagtgaataaaatttgcagtttctaaaaa |
302 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||| |
|
|
| T |
27754232 |
atctgagccctttgtaattctgtttgttttctagccgcgagttttttgtgtgcttcttgcacacacttgtc--gtgaataaaatttgccgtttctaaaaa |
27754329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 27754037 - 27754102
Alignment:
| Q |
8 |
gtatcctgtgtatattgcggtgacctgtgctggttttgtgcagttttgcatatggcagcctcatta |
73 |
Q |
| |
|
|||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27754037 |
gtatgctgtttatattgcggtgacccgtgctggttttgtgcagttttgcatatggcagcctcatta |
27754102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 306
Target Start/End: Complemental strand, 21941778 - 21941680
Alignment:
| Q |
205 |
tctgagccctttgtaattctgtttgttatctagccgcgggtttttgtgtgcttcttgcgcacacacgtcaagtgaataaaatttgcagtttctaaaaaat |
304 |
Q |
| |
|
|||||||||| |||||||||||||||| | | ||||| ||||| ||||| ||||||| || || ||| |||||||||| || || ||||||||||||| |
|
|
| T |
21941778 |
tctgagccctctgtaattctgtttgtt-tatgcccgcgagttttagtgtgtttcttgcacaaactcgt--agtgaataaatttagccgtttctaaaaaat |
21941682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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