View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5564-Insertion-2 (Length: 432)
Name: NF5564-Insertion-2
Description: NF5564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5564-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 7 - 405
Target Start/End: Complemental strand, 15395839 - 15395441
Alignment:
| Q |
7 |
acattttgcactgctccattgcatctatgattccacccatttcaatgttgggtgttgttggggtctcctatgccatataggaaaggatatagtgggcatt |
106 |
Q |
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| T |
15395839 |
acattttgcactgctccattgcatctatgattccacccatttcaatgttgggtgttgttggggtctcctatgccatagaggaaaggatatagtgggcatt |
15395740 |
T |
|
| Q |
107 |
atgctatgtgtgtagtgtgtggacttgtgaatgacccactaaagctttaaactttcatataaatgctaatgaatttaacctatgaacttctaacattttg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15395739 |
atgctatgtgtgtagtgtgtggacttgtgaatgacccactaaagctttaaactttcatataaatgctaatgaatttaacctatgaacttctaacattttg |
15395640 |
T |
|
| Q |
207 |
tattgatgtgaaagacaaaggcagagattgcttattatggctaaacagtctaacatgttcatttcttcctctagggtgacaagctatgcttaaatgttta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15395639 |
tattgatgtgaaagacaaaggcagagattgcttattatggctaaacagtctaacatgttcatttcttcctctagggtgacaagctatgcttaaatgttta |
15395540 |
T |
|
| Q |
307 |
gtttgaaatgatatacaaggagtaaactatcaatttgatcccgtgattctcaaattagttattgtatctattaatattttaaaatagttactctttttg |
405 |
Q |
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| T |
15395539 |
gtttgaaatgatatataaggagtaaactatcaatttgatcctgtgattctcaaattagtcattgtatttattaatattttaaaatagttactgtttttg |
15395441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 36 - 321
Target Start/End: Complemental strand, 930501 - 930220
Alignment:
| Q |
36 |
attccacccatttcaatgttgggtgttgttggggtctcctatgccatataggaaaggatatagtgggcattatgctatgtgtgtagtgtgtggacttgtg |
135 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
930501 |
attccacccatttcaatgttgggtgttgttgggatctcctatgccata--ggaaaggatatagtgggcattatgctatgtgtgtagtgtgtggacttgtg |
930404 |
T |
|
| Q |
136 |
aatgacccactaaagctttaaactttcatataaatgctaatgaatttaacctatgaacttctaacattttgtattgatgtgaaagacaaaggcagagatt |
235 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
930403 |
aatggaccactgaagctttaaactttcatataaatgctaatgaatttaacctatgaacttctaacattttgtattgatgtgaaagacaaaggcagagatt |
930304 |
T |
|
| Q |
236 |
gcttattatggctaaacagtctaacatgttcatttcttcctctagggtgacaagctatgcttaaatgtttagtttgaaatgatata |
321 |
Q |
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| T |
930303 |
gcttattatggcaaaacagtcta--atattcatttcttctcctaggatgacaaattatgcttaaatatttagtgtgaattgatata |
930220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 395
Target Start/End: Complemental strand, 26330384 - 26330338
Alignment:
| Q |
349 |
gtgattctcaaattagttattgtatctattaatattttaaaatagtt |
395 |
Q |
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|||||| |||||||||| |||| ||||||||||||||||||||||| |
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| T |
26330384 |
gtgattatcaaattagtcattgactctattaatattttaaaatagtt |
26330338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 394
Target Start/End: Original strand, 39051119 - 39051159
Alignment:
| Q |
354 |
tctcaaattagttattgtatctattaatattttaaaatagt |
394 |
Q |
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| T |
39051119 |
tctcaaattagtcattgattctattaatattttaaaatagt |
39051159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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