View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5564-Insertion-3 (Length: 285)

Name: NF5564-Insertion-3
Description: NF5564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5564-Insertion-3
NF5564-Insertion-3
[»] chr1 (1 HSPs)
chr1 (7-285)||(37745448-37745732)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 7 - 285
Target Start/End: Complemental strand, 37745732 - 37745448
Alignment:
Q  7 agaatccagcaccaattccatttccagttcca------ccaagatttccagggatagtggggaaagtattaccactggtacagccaccagggaaggtgca 100  Q
    ||||||||||||||||||||||||||||||||      ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37745732 agaatccagcaccaattccatttccagttccagttccaccaagatttccagggatagtgggaaaagtattaccactggtacagccaccagggaaggtgca 37745633  T
Q  101 aaaccttaacccatcaggaccatagtttacacctgcagcaaagttaccagggctactgggaagtatcccatttcctcctcccatattgaaagtttcagga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37745632 aaaccttaacccatcaggaccatagtttacacctgcagcaaagttaccagggctactgggaagtatcccatttcctcctcccatattgaaagtttcagga 37745533  T
Q  201 tgtttcacactctccttcagtaaccttccagctccttccacatgaattgaacaaaatataaccaacacaatgcacaacatcacca 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37745532 tgtttcacactctccttcagtaaccttccagctccttccacatgatttgaacaaaatataaccaacacaatgcacaacatcacca 37745448  T

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