View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5564_high_6 (Length: 267)
Name: NF5564_high_6
Description: NF5564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5564_high_6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 20614131 - 20613883
Alignment:
| Q |
18 |
agtataggtgtagcataacaatatccttgtaacaaacttataaagttagttttagttatataccttacagattaaagtctcaattcaatgtaatattcaa |
117 |
Q |
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| T |
20614131 |
agtataggtgtagcataacactatccttgtaacaaacttataaagttagttttagttatatagcttacagattaaaaactcaattcaatgtaatattcaa |
20614032 |
T |
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| Q |
118 |
caatcagagaataaaaaataagctttaaagcattgtgaataatctcttacactctctctgttatggaatataaatctcaatcccaattctaccctagttc |
217 |
Q |
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| T |
20614031 |
cgatcagaaaataaaaaacaagctttaaagc-ttgtgaataatctcttacactctctctgttatggaacataaatctcaatcccaattctaccctagttc |
20613933 |
T |
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| Q |
218 |
aataacatgtatatgaaatcccatagattcctcgattatgatcttctcta |
267 |
Q |
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| T |
20613932 |
aataacgtgtatatgaaatcccatagattcctcgattatgatcttctcta |
20613883 |
T |
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