View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5564_low_1 (Length: 504)
Name: NF5564_low_1
Description: NF5564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5564_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 177 - 460
Target Start/End: Original strand, 20613497 - 20613780
Alignment:
| Q |
177 |
actattctccatgcaatcctatcaactggtatcagcaacatacacctccgatcattcaagattcatcaagaatcatatgcatcattctcttgatcattga |
276 |
Q |
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| T |
20613497 |
actattctccctacaatcctatcaactggtatcagcaacatacacctccggtcattcaagattcatcaagaatcatatgcatcattctcttgatcattga |
20613596 |
T |
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| Q |
277 |
ttagaagaagatggcaagtgcaattgatcaacttggaaacagttttagaggaaagatgaaagtctttttggttttcaaacctgtaaattgaggatattat |
376 |
Q |
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| T |
20613597 |
ttagaagaagatggcaagtgcaattgatcaacttggaaacagttttagaggaaagatgaaagtctttttggttttcaaacctgtaaattgaggatattat |
20613696 |
T |
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| Q |
377 |
tgtctaggcagatacttgacaacatatggaaaacaaaatacttacaattcctacttgatcataatcaaggcagaagtagagatg |
460 |
Q |
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| T |
20613697 |
tgtcttggcagatacttgacaacatttggaaaagaaaatacttaccattcctacttgatcataatcaaggcagaagtagagatg |
20613780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 20613339 - 20613462
Alignment:
| Q |
19 |
caagtaattaaccatatgttataattagattattggggctatgtatgatatagaaaacctatcaccacatcgtatatgtatactattgaagtcaaggagt |
118 |
Q |
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| T |
20613339 |
caagtaattaaccatatgttataattagattattggggctatgtatgatatagaaaacctatcaccacgtcgtatatgtatactattgaagtcaaggagt |
20613438 |
T |
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| Q |
119 |
tgttgcatacacaaaaattcacac |
142 |
Q |
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| T |
20613439 |
tgttgcatacacaaaaattcacac |
20613462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 459 - 504
Target Start/End: Original strand, 20613838 - 20613883
Alignment:
| Q |
459 |
tggcagaggcgcggttgttgcaactactggagtagcggtttgcact |
504 |
Q |
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| T |
20613838 |
tggcagaggcgcggttgttgcaactattggagtagcagtttgcact |
20613883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 331
Target Start/End: Original strand, 30117178 - 30117265
Alignment:
| Q |
241 |
atcaagaatcatatgcatcattctcttgatcattgattagaagaagatggcaagtgcaattgatcaacttggaaacagttttagaggaaag |
331 |
Q |
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| T |
30117178 |
atcaagaatcatttgcatccctcacttgctcattgattagaagatga---caagtactatggatcaacttggaaacagttttggaggaaag |
30117265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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