View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5564_low_2 (Length: 490)
Name: NF5564_low_2
Description: NF5564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5564_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 13 - 467
Target Start/End: Original strand, 42223145 - 42223599
Alignment:
| Q |
13 |
attctctgtgtaaggggctttttggaatgtaaattttttcccacccacctcaacatcaaagtcgtgaataacgtattctataacataatgtgctcctgaa |
112 |
Q |
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| T |
42223145 |
attctctgtgtaaggggctttttggaatgtaaattttttcccacccatctcaacatcaaagtcgtgaataacgtattctataacataatgtgctcctgaa |
42223244 |
T |
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| Q |
113 |
gactgttacttggtaaataacaattaatatggtgaaatgaaattgactaagaagatatttataaattaaaattctggtgggtggatgcgatctgattaca |
212 |
Q |
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| T |
42223245 |
gactgttacttggtaaataacaattaatatggtgaaatgaaattgactaagaagatatttataaattaaaattctggtgggtggatgtgatctgattaca |
42223344 |
T |
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| Q |
213 |
tttcagcccaaaagatgcaagtgcaactctgtaagagaagtgtgctgcttaataaacttcaggcattgctttaggcaatgataaaattgcatctttaaaa |
312 |
Q |
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| T |
42223345 |
tttcagcccaaaagatgcaagtgcaactctgtaagagaagtgtgctgcttaataaacttcaggcattgctttaggcaatgataaaattgcatctttaaaa |
42223444 |
T |
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| Q |
313 |
acaaaacatcccaacaaggttggatggaaaacgaaagatgataaggataaattagcatttcccataattttatagtagcaatgatgaaatgggaggttag |
412 |
Q |
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| T |
42223445 |
acaaaacatcccaacaagattggatggaaaacgaaaaatgataaggataaattagcatttcccataattttatagtagcaatgatgaaatgggaggttag |
42223544 |
T |
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| Q |
413 |
acgagtctgtcggccttccacattaatccatcatgatcaataattttacttggac |
467 |
Q |
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| T |
42223545 |
acgagtctgtcggccttccacattaatccatcatgatcaataattttacttggac |
42223599 |
T |
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