View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5564_low_4 (Length: 282)
Name: NF5564_low_4
Description: NF5564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5564_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 38022027 - 38021762
Alignment:
| Q |
1 |
caagttattgacccaattgatagacaacgaagataggtacnnnnnnnnnnnnnncaaagtacttataggtgagtcggatagaaccttcccacacatggtg |
100 |
Q |
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| T |
38022027 |
caagttattgacccaattgatagacaacaaagatagatacaaaaaaaggaaaaacaaagtacttataggtgagtcggatagaaccttcccacacatggtg |
38021928 |
T |
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| Q |
101 |
caacttctgtaaacagaaaacaacgtggtatagtttattgaaccatagtatttgaatacaagattgtaaactctaaaccttaagttagaacaacataaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38021927 |
caacttctgtaaacagaaaacaacgtggtatagtttattgaaccatagtatttgaatacaagattgtaaactctaaaccttaagttagaacaacataaag |
38021828 |
T |
|
| Q |
201 |
gtactgtgagctgctctgcagcttgcgacgtgcaagtttggattgattggtaaaaaatatattttt |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38021827 |
gtactgtgagctgctctgcagcttgcgacgtgcaagtttggattgattggtaaaaaatatattttt |
38021762 |
T |
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