View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565-Insertion-1 (Length: 1053)
Name: NF5565-Insertion-1
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 528; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 373 - 994
Target Start/End: Complemental strand, 53208316 - 53207688
Alignment:
| Q |
373 |
aagcatgttgcttcttataaaaaagaaacaaatcatattatgattcaactaaattactgttcagaacaaaattatttaaacaataaggaatgcaatgata |
472 |
Q |
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| T |
53208316 |
aagcatgttgcttcttataaaaaagagtcaaatcatattatgattcaactaaattactgttcagaacaaaattatttaaacaataaggaatgcaatgata |
53208217 |
T |
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| Q |
473 |
tatttatattcgtgtcacaattgataacaagaaggaccacccaaaaactatgagtgaaacaaggtcaaggaccaccaagattataatagttgttggtgaa |
572 |
Q |
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| T |
53208216 |
tatttatattcgtgtcacaattgataacaagaaggaccacccaaaaactatgagtgaaacaaggtcaaggaccaccaagattataatagttgttggtgaa |
53208117 |
T |
|
| Q |
573 |
cgatgataactaatagaaaattctttgttgaaaagccaacccaataatagagataattaattagtacaatatcactaatgattcccaattgtacacatag |
672 |
Q |
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| T |
53208116 |
cgatgaccactaatagaaaattctttgttgaaaagccaacccaataatagagataattaattagtacaatatcactaatgattcccaattgtacgcatag |
53208017 |
T |
|
| Q |
673 |
ctataaacaaacaaagtagtaattcccttc----atatgaaacatatatatcttc-ttcattccaaaattattgatgttgatattattattttc-taact |
766 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53208016 |
ctataaacaaacaaagtagtaattcccttcatatatatgaaacatatatatcttctttcattccaaaattattgatgttgatattattattttcttaact |
53207917 |
T |
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| Q |
767 |
attggtattttaaaaatcaaatgtttaatcattcgtttcgatttaaacttagggtctctaaatccttaacttgaatcatttgagttatctaaccttccca |
866 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| | |
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| T |
53207916 |
attggtattttaaaaatcaaatgcttaatcattcgtttcgatttaaacttagggtctctaaatccttaacttaaataagttgagttatctaaccttccaa |
53207817 |
T |
|
| Q |
867 |
atgatctaataaaaggtaagcgcatgtttaaaatctgttcattattcaaaactatttcttagtttttgcgaaacaacccg-aaaggatcttagttacatg |
965 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| |
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| T |
53207816 |
atgatctaataaaaggtaagcgcatgtttaaaatttgttcattattcaaaactatttcttagtttttgcaaaacaacctgaaaaggatcttagttacatg |
53207717 |
T |
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| Q |
966 |
catcctcagattagtttctactatatttt |
994 |
Q |
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| T |
53207716 |
catcgtgagattagtttctactatatttt |
53207688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 8 - 306
Target Start/End: Complemental strand, 53208623 - 53208329
Alignment:
| Q |
8 |
gctacatatatggctggttaaggtagtctcaaattctcaaaagaaatagttgagagacccttcctatttcttttgtcttgttctataagttttctcataa |
107 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53208623 |
gctacatatatggctggttaaggtagtctcaatttctcaaaagaaatagttgagagacccttcctatttcttttgtcttgttctataagttttctcataa |
53208524 |
T |
|
| Q |
108 |
aaactaaaaagatactacnnnnnnntagtgttaatcaagtagaaggaagcatgtcaaaattgtgataatgtagaatacactttggatctactagcagcat |
207 |
Q |
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| T |
53208523 |
aaactaaaaagatacaa----aaaatagtgttaatcaagtagaaggaagcatgtcaaaattgtgataatgtagaatatactttggacctactagcagcat |
53208428 |
T |
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| Q |
208 |
atgctactcaattgtatgtgatattaaatagaaaataagagaaggaggtgagtcacacgtactaagtgagaagacgatattaaatcacccatttacaag |
306 |
Q |
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| T |
53208427 |
atgctactcaactgtgtgtgatattaaatagaaaataagagaaggaggtgagtcacacgtactaagtgattagacgatattaaatcacccatttacaag |
53208329 |
T |
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