View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5565-Insertion-2 (Length: 700)

Name: NF5565-Insertion-2
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5565-Insertion-2
NF5565-Insertion-2
[»] chr2 (3 HSPs)
chr2 (262-700)||(36456559-36456997)
chr2 (8-220)||(36457039-36457251)
chr2 (486-700)||(36461816-36462030)


Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 262 - 700
Target Start/End: Complemental strand, 36456997 - 36456559
Alignment:
Q  262 tacataacaacagaacaatttataaaaccaaccatgttcttatatctggtggttgctagatatttcaagcagtggatgtcaataacaaattcaattcaat 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36456997 tacataacaacagaacaatttataaaaccaaccatgttcttatatctagtggttgctagatatttcaagcagtggatgtcaataacaaattcaattcaat 36456898  T
Q  362 gtactaattatcaactagtaaactatgatattattattgataattcaatagatcaattttaaagttcagctatgaagggaacaaaccataaaattgtaat 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |    
T  36456897 gtactaattatcaactagtaaactatgatattattattgataattcaatagatcaattttaaagttcagctatgacgggaacaaaccataaatttgtatt 36456798  T
Q  462 tcaaaaccttccatcatcctatagattctaaagcaatattaccaatcaattgagccaatggaacaggacactttgtgacaatatcaaacctagatgaatt 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36456797 tcaaaaccttccatcatcctatagattctaaagcaatattaccaatcaattgagccaatggaacaggacactttgtgacaatatcaaacctagatgaatt 36456698  T
Q  562 tgaggcatgtccaaagagtgataagcttaacaaagcaaagtcctttaaactcaattttgaagacaaaaacccttgccagtaataaggttttaaatcaaag 661  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36456697 tgaggcatgtccaaagagtgataagcttaacaaagcaaagtcctttaaactcaattttgaagacaaaaacccttgccagtaataaggtttcaaatcaaag 36456598  T
Q  662 aatgcatcaaagaaacttctagtctcattcaaatcaagc 700  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36456597 aatgcatcaaagaaacttctagtctcattcaaatcaagc 36456559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 36457251 - 36457039
Alignment:
Q  8 ctgacagcagcagcgtattcaaattctgcaccagttaggcctcccaatcaatagcattacgcttccaagatagcctctatgaccacccattattaatcca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36457251 ctgacagcagcagcgtattcaaattctgcaccagttaggcctcccaatcaatagcattacgcttccaagatagcctctatgaccacccattattaatcca 36457152  T
Q  108 ctcccctatgttgctaattatttcatgtgttagtagcttgttgaattctgatactatgcagctcatttttggttcatcttgtgctaaattttttgtttca 207  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36457151 ctcccctatgttgctaattatttcatgtgttagtaccttgttgaattctgatactatgcagctcatttttggttcatcttgtgctaaattttttgtttca 36457052  T
Q  208 cgtataatatttg 220  Q
    ||| |||||||||    
T  36457051 cgtgtaatatttg 36457039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 486 - 700
Target Start/End: Original strand, 36461816 - 36462030
Alignment:
Q  486 attctaaagcaatattaccaatcaattgagccaatggaacaggacactttgtgacaatatcaaacctagatgaatttgaggcatgtccaaagagtgataa 585  Q
    ||||||||  ||||||||| |||| || ||||||| |  ||||||||||| || ||||| |||||||||||| ||||||||||||| |||| | ||| |     
T  36461816 attctaaacaaatattacccatcattttagccaatagctcaggacactttctggcaatagcaaacctagatggatttgaggcatgtgcaaacaatgacat 36461915  T
Q  586 gcttaacaaagcaaagtcctttaaactcaattttgaagacaaaaacccttgccagtaataaggttttaaatcaaagaatgcatcaaagaaacttctagtc 685  Q
     || ||| || ||| ||| |||||| ||||  ||||||| |  |||||||||  ||||||||||||||| ||||||||||||||||| ||    |||||     
T  36461916 actcaaccaaacaatgtcatttaaagtcaagcttgaagagaggaacccttgcatgtaataaggttttaactcaaagaatgcatcaaaaaattgcctagtt 36462015  T
Q  686 tcattcaaatcaagc 700  Q
    |||||||||||||||    
T  36462016 tcattcaaatcaagc 36462030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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