View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565-Insertion-3 (Length: 689)
Name: NF5565-Insertion-3
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 8 - 689
Target Start/End: Complemental strand, 56539806 - 56539141
Alignment:
| Q |
8 |
actacaacatctcgtaattaattaaagttatttgaagtcacattcttgttcttggtagaaatttatagaacatagttctctttggatctaccttgctacc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56539806 |
actacaacatctcgtaattaattaaagttatttgaagtcacattcttgttcttggtagaaatttatagaacatagttctctttggatctaccttgctacc |
56539707 |
T |
|
| Q |
108 |
aaagtaccaattttccacgtagtcatacataagaagaaaaaatgttacgcagattagtttctttctttctttctttcaatgtgttcaggnnnnnnnnnnn |
207 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
56539706 |
aa--------ttttccacgtagtcatacataagaagaaaaaatgttacacagattagtttctttctttctttctttcaatgtgttcaggttattattatt |
56539615 |
T |
|
| Q |
208 |
nnnnnnnnnnngtatgcaatatcaaatctaatacacataataagaaaatacatctataaatataatcagtagaatcgaaaacgaaaatctaaaattagaa |
307 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56539614 |
attat------gtatgcaatgtcaaatctaatacacataataagaaaatacatctataaatataatcagtagaatcgaaaacgaaaatctaaaattagaa |
56539521 |
T |
|
| Q |
308 |
aatatgattaattttatcaccaatgtatgcaatcacatgcttatttgttgaaggtaatctcactaaagctgttgctgcatgtactttgattatcagatat |
407 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56539520 |
aatatgattaattttatcacgaatgtatggaatcacatgcttatttgttgaaggtaatctcactaaagctgttgctgcatgtactttgattatcagatat |
56539421 |
T |
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| Q |
408 |
tatcagaagttgcttccctgctttactatttacacctttggataacatctttctttgttcacagtgtctctccttgtgaaaactcttctctgcaatcata |
507 |
Q |
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| T |
56539420 |
tattagaagttgcttccctgctttactatttacacctttggataacatctttctttgttcacagtgtctctccttgtgaaaactcttctctgcaatcata |
56539321 |
T |
|
| Q |
508 |
ttgaatctcttgcaaatatcctttttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaaaatgcagcttgatcgtaagctaaag |
607 |
Q |
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| T |
56539320 |
ttgaatctcttgcaaatatcc--tttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaaaatgcagcttgatcgtaagctaaag |
56539223 |
T |
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| Q |
608 |
cagcatcctcagcactgtcaaatgttccaagccaaacacttcttccttttcttgttgtgttccttttcttgttgtatctctg |
689 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
56539222 |
cagcatcctcagcactgtcaaatgttccaagccaaacacttcttccttttcttgttgtgttctttttcttgttgtgtctctg |
56539141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 8e-63; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 421 - 667
Target Start/End: Original strand, 30689553 - 30689811
Alignment:
| Q |
421 |
ttccctgctttactatttacacctttggataacatctttctttgttcacagtgtctctcctt--------------gtgaaaactcttctctgcaatcat |
506 |
Q |
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|||||||||||| | ||||||||||| ||||||||||||||||||||| |||| ||||| || ||||| || ||||||||||||||| |
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| T |
30689553 |
ttccctgctttattctttacaccttttgataacatctttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaagacccttctctgcaatcat |
30689652 |
T |
|
| Q |
507 |
attgaatctcttgcaaatatcctttttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaaaatgcagcttgatcgtaagctaaa |
606 |
Q |
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||||||||||||||||| || |||| |||||||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||| ||||||||| |
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| T |
30689653 |
attgaatctcttgcaaagattcttt--gaccctttgaacagaaaaattgagcacagcatcataacctctcattgaaaatgcagcttgatcataagctaaa |
30689750 |
T |
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| Q |
607 |
gcagcatcctcagcactgtcaaatgttccaagccaaacacttcttccttttcttgttgtgt |
667 |
Q |
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| T |
30689751 |
gcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtgt |
30689811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 483 - 644
Target Start/End: Original strand, 30671734 - 30671893
Alignment:
| Q |
483 |
gtgaaaactcttctctgcaatcatattgaatctcttgcaaatatcctttttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaa |
582 |
Q |
| |
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||||| || |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
30671734 |
gtgaagacccttctctgcaatcatattgaatctcttgcaaagattcttt--gaccctttgaacagaaaaattgagcacggcattattacctctcattgaa |
30671831 |
T |
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| Q |
583 |
aatgcagcttgatcgtaagctaaagcagcatcctcagcactgtcaaatgttccaagccaaac |
644 |
Q |
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| T |
30671832 |
aatgcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgttccaagccaaac |
30671893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 483 - 665
Target Start/End: Original strand, 30718672 - 30718852
Alignment:
| Q |
483 |
gtgaaaactcttctctgcaatcatattgaatctcttgcaaatatcctttttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaa |
582 |
Q |
| |
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||||| || ||||||||||||||||||||||| |||||||| || |||| |||||||||||||||||||||||||||| ||| || |||||||| |||| |
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| T |
30718672 |
gtgaagacccttctctgcaatcatattgaatcgcttgcaaagattcttt--gaccctttgaacagaaaaattgagcacagcatcataacctctcattgaa |
30718769 |
T |
|
| Q |
583 |
aatgcagcttgatcgtaagctaaagcagcatcctcagcactgtcaaatgttccaagccaaacacttcttccttttcttgttgt |
665 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| ||||||||| |
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| T |
30718770 |
aatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgt |
30718852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 496 - 665
Target Start/End: Original strand, 30698528 - 30698695
Alignment:
| Q |
496 |
tctgcaatcatattgaatctcttgcaaatatcctttttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaaaatgcagcttgat |
595 |
Q |
| |
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|||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||| |
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| T |
30698528 |
tctgcaatcatattgaatctcttgcaaagattcttt--gaccctttgaacagaaaaattgagcacagcattattacctctcattgagaatgcagcttgat |
30698625 |
T |
|
| Q |
596 |
cgtaagctaaagcagcatcctcagcactgtcaaatgttccaagccaaacacttcttccttttcttgttgt |
665 |
Q |
| |
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| ||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||| ||||||||| |
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| T |
30698626 |
cataagctaaagcagcatcttcagcactatcaaatgttcctagccaaactcttcttcctcctcttgttgt |
30698695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 32791550 - 32791719
Alignment:
| Q |
8 |
actacaacatctcgtaattaattaaagttatttgaagtcacattcttgttcttggtagaaatttatagaacatagttctctttggatctaccttgctacc |
107 |
Q |
| |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
32791550 |
actacagcatctagtaattaattaaagttatttgaagtcacattcttgttcttggtagaaatttatagaacacagttctctttggctctaccttgc---- |
32791645 |
T |
|
| Q |
108 |
aaagtaccaattttccacgta-----gtcatacataagaagaaaaaatgttacgcagattagtttctttctttctttc |
180 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32791646 |
----taccaattttccacgtagagatgtcatacataagaagaaaaaatgttacacagattagtttctttctttctttc |
32791719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 496 - 644
Target Start/End: Original strand, 30656586 - 30656732
Alignment:
| Q |
496 |
tctgcaatcatattgaatctcttgcaaatatcctttttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaaaatgcagcttgat |
595 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
30656586 |
tctgcaatcatattgaatctcttgcaaagattcttt--gaccctttgaacagaaaaattgagcacagcattattacctctcattgaaaatgcagcttgat |
30656683 |
T |
|
| Q |
596 |
cgtaagctaaagcagcatcctcagcactgtcaaatgttccaagccaaac |
644 |
Q |
| |
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| ||||||||||||||||| |||||||| ||||||||||| | |||||| |
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| T |
30656684 |
cataagctaaagcagcatcttcagcactatcaaatgttcctaaccaaac |
30656732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 483 - 665
Target Start/End: Original strand, 30710398 - 30710578
Alignment:
| Q |
483 |
gtgaaaactcttctctgcaatcatattgaatctcttgcaaatatcctttttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaa |
582 |
Q |
| |
|
||||| || ||| |||||||||||||||||||||||||||| || |||| ||| |||| | |||||||||||| | | ||||||||||||||| |||| |
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| T |
30710398 |
gtgaagacccttttctgcaatcatattgaatctcttgcaaagattcttt--gacgctttcgaaagaaaaattgaggaaagcattattacctctcattgaa |
30710495 |
T |
|
| Q |
583 |
aatgcagcttgatcgtaagctaaagcagcatcctcagcactgtcaaatgttccaagccaaacacttcttccttttcttgttgt |
665 |
Q |
| |
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|||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||| ||||||||| |
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| T |
30710496 |
aatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaacccttcttcctcctcttgttgt |
30710578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 443 - 483
Target Start/End: Original strand, 30671680 - 30671720
Alignment:
| Q |
443 |
ctttggataacatctttctttgttcacagtgtctctccttg |
483 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| |
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|
| T |
30671680 |
cttttgataacatttttctttgttcacagtgtctctccttg |
30671720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 32791761 - 32791819
Alignment:
| Q |
266 |
aatataatcagtagaatcgaaaacgaaaatctaaaattagaaaatatgattaattttatc |
325 |
Q |
| |
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||||||||||| ||||| ||||| ||||| |||||||||||||||| |||||||||||| |
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| T |
32791761 |
aatataatcagaagaatggaaaagaaaaat-taaaattagaaaatataattaattttatc |
32791819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 30698327 - 30698373
Alignment:
| Q |
375 |
gctgttgctgcatgtactttgattatcagatattatcagaagttgct |
421 |
Q |
| |
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||||||||||| || ||||||||||||||||||| | |||||||||| |
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| T |
30698327 |
gctgttgctgcttgaactttgattatcagatattgttagaagttgct |
30698373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 407
Target Start/End: Original strand, 30689443 - 30689476
Alignment:
| Q |
374 |
agctgttgctgcatgtactttgattatcagatat |
407 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| |
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|
| T |
30689443 |
agctgttgctgcttgtactttgattatcagatat |
30689476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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