View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565-Insertion-6 (Length: 135)
Name: NF5565-Insertion-6
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565-Insertion-6 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 5e-54; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 39692638 - 39692752
Alignment:
| Q |
21 |
catacacttatttgaagtaaatagcatctctcttttaaactttcacctttgcacttgcagggcacaattctattattcttgacggcaactattaattcac |
120 |
Q |
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| T |
39692638 |
catacacttatttgtggtaaatagcatctctcttttaaactttcacctttgcacttgcagggcacaattctattattcttgacggcaactattaattcac |
39692737 |
T |
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| Q |
121 |
taaagcctcatccat |
135 |
Q |
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| T |
39692738 |
taaagcctcatccat |
39692752 |
T |
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Target: chr2; HSP #2
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 39930660 - 39930574
Alignment:
| Q |
49 |
tctcttttaaactttcacctttgcacttgcagggcacaattctattattcttgacggcaactattaattcactaaagcctcatccat |
135 |
Q |
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| T |
39930660 |
tctcttttaaactttcaactttgcacttgcagggcacaattctattatttttgacagaaacaatcaattcattaaagcctcatccat |
39930574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 39702644 - 39702725
Alignment:
| Q |
54 |
tttaaactttcacctttgcacttgcagggcacaattctattattcttgacggcaactattaattcactaaagcctcatccat |
135 |
Q |
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| T |
39702644 |
tttaaattttcacatttgaatttgcagggcacaattcttttaaccttaacagcaacaatcaattcattaaagcctcatccat |
39702725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 39935202 - 39935116
Alignment:
| Q |
49 |
tctcttttaaactttcacctttgcacttgcagggcacaattctattattcttgacggcaactattaattcactaaagcctcatccat |
135 |
Q |
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| T |
39935202 |
tctcttttaattttttacctttgcacatgcagggcacaattattttgtttttgacagcaataatcaattctttaaagcctcatccat |
39935116 |
T |
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