View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_high_1 (Length: 613)
Name: NF5565_high_1
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 525; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 19 - 603
Target Start/End: Original strand, 41484625 - 41485210
Alignment:
| Q |
19 |
aagacaaacttactgtaattctaaatatgtactgtgtaaattgtaaatctcatgtgcttgcagaaagtcnnnnnnn-ctttcttgatggaactaaaagtg |
117 |
Q |
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| T |
41484625 |
aagacaaacttactgtaattctaaatatgtaccgtgtaaattgtaaatctcatgtgcttgcagaaagtcttttttttctttcttgatggaactaaaagtg |
41484724 |
T |
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| Q |
118 |
ttctttatcaatatgaaagttttatataaatcttatttttatgcggaagatgcaataactttttgtacattccatgcagattccctccaatacgtagtgc |
217 |
Q |
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| T |
41484725 |
ttctttatcaatatgaaagttacatataaatcttatttttatgcggaagatgcaataactttttgtacattccatgcagattccctccaatacgtagtgc |
41484824 |
T |
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| Q |
218 |
agactacttcaatgagcgattcaagctcatatatgggtctgaaaaggatcttaaatggtccctttagtatatgatcaccgaaggaatgcactttctttct |
317 |
Q |
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| T |
41484825 |
agactacttcaatgagcgattcaagctcatatatgggtctgaaaaggatcttaaatggtccctttagtctatgatcaccgaaggaatgcactttctttct |
41484924 |
T |
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| Q |
318 |
gaaatctatatccaagggaaaatgggtgatccctgacgattttggggaagaggaagaaggttctgaagaggcagatgtcgaagaggatgcatgcttatct |
417 |
Q |
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| T |
41484925 |
gaaatctatatccgagggaaaatgggtgatccctgacgattttggggaagaggaagaaggttctgaagaggcagatgtcgaagaggatgcatgcttatct |
41485024 |
T |
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| Q |
418 |
tgcttttagtctcttgtattttggggaaataatgctagaatattttcagccctttcggttcgtttttaaatatacagtaatctttctcaaatatctttgt |
517 |
Q |
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| T |
41485025 |
tgcttttagtctcttgtattttggggaaataatgttagaatattttcagccctttcggttcgcttttaaatatacagtaatctttctcgaatatctttgt |
41485124 |
T |
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| Q |
518 |
gtttaacatcctttgcgtgaatattttcttttcgttgttttgtttaatgttttgtcaagagtagtgattccatacaatgatgatgt |
603 |
Q |
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| T |
41485125 |
gtttaacatcctttgcgtgaatattttcttttcgttgttttgtttaatgttttgtcaagagtagtgattccatacaatgatgatgt |
41485210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 41492869 - 41492929
Alignment:
| Q |
192 |
tgcagattccctccaatacgtagtgcagactacttcaatgagcgattcaagctcatatatg |
252 |
Q |
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| T |
41492869 |
tgcagattccctccaatacgtagtggggactacttgaatcagcggttcaagctcacatatg |
41492929 |
T |
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