View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_high_10 (Length: 442)
Name: NF5565_high_10
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Original strand, 36840478 - 36840898
Alignment:
| Q |
18 |
aaccctagcattccaaacttccaaaagagtgtttggaaatgtaacatcaccatcaacaccacaaaagattgggtccttatgcgagtttgtgtgcctggat |
117 |
Q |
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| T |
36840478 |
aaccctagcattccaaacttccaaaagagtgtttggaaatgtaacatcaccatcaacaccacaaaagattgggtccttatgcgagtttgtgtgcctggat |
36840577 |
T |
|
| Q |
118 |
tggacgaagatgatttgttttctaattacactagagatagtcactttacagagtatttgaataattccaagtatacaacag-caggggttggttttggtg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36840578 |
tggacgaagatgatttgttttctaattacactagagatagtcactttacagagtatttgaataattccaagtatacaacaggcaggggttggttttggtg |
36840677 |
T |
|
| Q |
217 |
gtgattggaatgttcttatagttagtaccaacacaacttttttagataacaacacaactttcgtagatatttcttctgctagttatttgcttgatggttg |
316 |
Q |
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| T |
36840678 |
gtgattggaatgttcttatagttagtaccaacactacttttttagataacaacacaactttcgtagatatttcttctgctagttatttgcttgatggttg |
36840777 |
T |
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| Q |
317 |
gctactgatgatggctacattctggagtgtgtttgtttttctattcaactaaactaattattatgtttctcatatgctgcttcatttgatggaattttct |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
36840778 |
gctactgatgatggctacattctggagtgtgtttgtttttctattcaactaaactaattgttatgtttctcgtatgctgcttcatttgatggaattttct |
36840877 |
T |
|
| Q |
417 |
tttcctttttattcacctatg |
437 |
Q |
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|||||||||||||||| |||| |
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| T |
36840878 |
tttcctttttattcacttatg |
36840898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 27 - 255
Target Start/End: Original strand, 36835917 - 36836145
Alignment:
| Q |
27 |
attccaaacttccaaaagagtgtttggaaatgtaacatcaccatcaacaccacaaaagattgggtccttatgcgagtttgtgtgcctggattggacgaag |
126 |
Q |
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||||| |||||| ||||||||||| ||| ||||| |||| |||||| |||||||||||| ||||| |||||| | | ||||||||| ||||||| ||| |
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| T |
36835917 |
attcctaacttcgaaaagagtgttgagaagtgtaagatcaacatcaataccacaaaagatggggtcattatgccaatgtgtgtgcctaaattggaccaag |
36836016 |
T |
|
| Q |
127 |
atgatttgttttctaattacactagagatagtcactttacagagtatttgaataattccaagtatacaacagcaggggttggttttggtggtgattggaa |
226 |
Q |
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||||||||||||||||||| |||| | |||||||||||||| ||||||| |||||||| ||||||| | |||||||||||||| || | |||||||| |
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| T |
36836017 |
atgatttgttttctaattatactaaaaatagtcactttacaaagtatttaaataattcaaagtatattatagcaggggttggttctgaagatgattggat |
36836116 |
T |
|
| Q |
227 |
tgttcttatagttagtaccaacacaactt |
255 |
Q |
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| T |
36836117 |
ggttcttattattagcactaacacaactt |
36836145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 36847374 - 36847559
Alignment:
| Q |
27 |
attccaaacttccaaaagagtgtttggaaatgtaacatcaccatcaacaccacaaaagattgggtccttatgcgagtttgtgtgcctg---gattggacg |
123 |
Q |
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|||||||||||||||| ||||||| ||||||| |||||| |||||||||||||| |||| ||||| |||||| |||||||||||| | | || ||| |
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| T |
36847374 |
attccaaacttccaaaggagtgttaagaaatgtgacatcaacatcaacaccacaagagatggggtcgttatgccagtttgtgtgcccgaaataatgcacg |
36847473 |
T |
|
| Q |
124 |
aagatgatttgttttctaattacactagagatagtcactttacagagtatttgaataattccaagtatacaacagcaggggttggt |
209 |
Q |
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|| |||||||||||||||||||||||| | |||||| |||||| |||||||||||||||||||||||| ||| ||||||||| |
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| T |
36847474 |
aaaatgatttgttttctaattacactaaaaatagtcgttttacaccatatttgaataattccaagtatacattagctggggttggt |
36847559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 36836206 - 36836250
Alignment:
| Q |
325 |
tgatggctacattctggagtgtgtttgtttttctattcaactaaa |
369 |
Q |
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||||| ||||||||| |||||||||||||||| | |||||||||| |
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| T |
36836206 |
tgatgactacattcttgagtgtgtttgtttttatgttcaactaaa |
36836250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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