View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_high_11 (Length: 441)
Name: NF5565_high_11
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_high_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 39 - 441
Target Start/End: Complemental strand, 54844723 - 54844321
Alignment:
| Q |
39 |
gagttgagttgaacgatgtcgtcttcgttaagcgagagtgatgatggcgttcaacgtcgtaaagtggttaatgattatcgcaaaaaactcctcaataaga |
138 |
Q |
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| T |
54844723 |
gagttgagttgaacgatgtcgtcttcgttaagcgagagtgatgatggcgttcaacgtcgtaaagtggttaatgattatcgcaaaaaactcctcaataaga |
54844624 |
T |
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| Q |
139 |
aggagcttgaatccagacgcaattcaggttcattcccaccaccaaaccctattcttttttccttattatcaactctgctagctaatacctctttctcttc |
238 |
Q |
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| T |
54844623 |
aggagcttgaatccagacgcaattcaggttcattcccaccaccaaaccctattcttttttccttattatcaactctgctagctaataactctttctcttc |
54844524 |
T |
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| Q |
239 |
tcagttaaactcgatttgcgtaaatcaattaaggaatttaacaaatcagaggataacttgaagtcttttcacagtgttggtcaaattgttgctgatattc |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
54844523 |
tcagttaaactcgatttgcgtaaatcaattaaggaatttaacaaatcagaggatgatttgaagtcttttcaaagtgttggtcaaattgttgctgaaattc |
54844424 |
T |
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| Q |
339 |
tcagacctcttgatcatcaacgcggtatgcttccttatttattgtctaattgttagtgactcactataatgtaatagaatttaataaattgttcttgttc |
438 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54844423 |
tcagacctcttgatcatcaacgcggtaagcttccttatttattgtctaattgttagtgactcactataatgtaatagaatttaataaattgttcttgttc |
54844324 |
T |
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| Q |
439 |
cgc |
441 |
Q |
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| T |
54844323 |
cgc |
54844321 |
T |
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