View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_high_12 (Length: 438)
Name: NF5565_high_12
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 24951892 - 24951465
Alignment:
| Q |
1 |
taatgtaaccgatgtagcctcaaatgagatcgcgtagacatnnnnnnncctttgatgttgcagcttaaatcgaggctgcagaccattatttaaagctctt |
100 |
Q |
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| T |
24951892 |
taatgtaaccgatgtagcctcaattgaggtcgcgtagacataaaaaaaactttgatgttgcggcttaaatcgtggctgcagaccattatttaaagctctt |
24951793 |
T |
|
| Q |
101 |
tgtagagttgttttagaaagatctaatcatagaaagaagaatgaaagatttgtctataattgctatgtttacttctttcatgtgattgaactgtttcaat |
200 |
Q |
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| T |
24951792 |
tgtagagttgttttagaaagatctaatcatagaaagaagaatgaaagatttgtctataattgctatgtttacttctttcatgtgattgaactgtttcaat |
24951693 |
T |
|
| Q |
201 |
ttgaatttcgaatttttgatgcaggttgaagaaaaatgcagaagccaccaaattctcatgagtttgcccttaaggagacaacgccgaacattggagcagg |
300 |
Q |
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| T |
24951692 |
ttgaatttcgaatttttgatgcaggttgaagaaaaatgcagaagccaccaaattctcatgagtttgcccttaaggagacaacgccgaacattggagcagg |
24951593 |
T |
|
| Q |
301 |
ggcagtcacaagggacaagttatcctgcacctatgacttagtcgagcaaatgcaatacctctacgttcgtgtcgtcaaagccaaagaattacctacaaaa |
400 |
Q |
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| T |
24951592 |
ggcagtcacaagggacaagctatcctgcacctatgacttggtcgagcaaatgcaatacctctacgttcgtgtcgtcaaagccaaagaattacctacaaaa |
24951493 |
T |
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| Q |
401 |
gatgtcactggtagtcttgatccctatg |
428 |
Q |
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| T |
24951492 |
gatgtcactggtagtcttgatccctatg |
24951465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 24951937 - 24951893
Alignment:
| Q |
126 |
atcatagaaagaagaatgaaagatttgtctataattgctatgttt |
170 |
Q |
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|||||| ||||||||||||| |||||||| |||||| |||||||| |
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| T |
24951937 |
atcatataaagaagaatgaatgatttgtccataatttctatgttt |
24951893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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