View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_high_14 (Length: 434)
Name: NF5565_high_14
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_high_14 |
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| [»] scaffold0042 (1 HSPs) |
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| [»] scaffold0599 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 419
Target Start/End: Complemental strand, 12635917 - 12635502
Alignment:
| Q |
9 |
gagatgaaagaatctgtgaattatgtgtcaaggtacacacaaaataagttgatttacaatttgcaaatacttgnnnnnnnn---gtgtgaacattagaaa |
105 |
Q |
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| T |
12635917 |
gagatcaaagaatcggtgaattatgtgtcaaggtacacacataataacttgatttacaatttgcaaatactttgaagaaaaaaagtgtgaacgtgagaaa |
12635818 |
T |
|
| Q |
106 |
acgtacctgcattgtct-ctatatgattattcatttgataaatgtaatttaaattttttagatattggactgagaaaggtatttgctgggtagataattc |
204 |
Q |
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| T |
12635817 |
acatacctgcattgtcttctatatgattattcacttgataaatgtaatttaatttttttagatattggattgagaaaggtatttgctgggcaagaaattc |
12635718 |
T |
|
| Q |
205 |
tgaggttcaagatatagatgacacaacaatgggatt-agactgcttaggttacatggccaccaagtttcacccggtaagttgaaagatttcaccacatta |
303 |
Q |
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| T |
12635717 |
ataggttcaagatatagatgacataacaatgggatttagactgcttaggttgcatggccaccaagtttcacccggtaagttgaaagatttcaccatatta |
12635618 |
T |
|
| Q |
304 |
taaagtgtaaaatgagaaattaagaaaattgatatttcaatttgatcataatttattatgtatgcatgcatactatcaattaataatattttcgtcaata |
403 |
Q |
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| T |
12635617 |
taaagagtaaaatgagaaattaaggtaattgatatttcaatttgatcataatttattatgtatgcgtgcataatatcaattattaatattttcgtcaata |
12635518 |
T |
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| Q |
404 |
attgatattaattagt |
419 |
Q |
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|| ||||||||||||| |
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| T |
12635517 |
atagatattaattagt |
12635502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 113 - 419
Target Start/End: Original strand, 37958905 - 37959215
Alignment:
| Q |
113 |
tgcattgtct-ctatatgattattcatttgataaatgtaatttaaattttttagatattggactgagaaaggtatttgctgggt-agataattctgaggt |
210 |
Q |
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| T |
37958905 |
tgcattgtcttctatatgattactcacttgataaatgtaatttaaaatttatagatattggactaagaaaggtatttgctgggcgaga-aattcagaggt |
37959003 |
T |
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| Q |
211 |
tcaagatatagatgacacaacaatgggatt-agactgcttaggttacatggccaccaagtttcacccggtaagttgaaagatttcaccacattataaagt |
309 |
Q |
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| T |
37959004 |
tcaagatatagacgacacagcaatgggatttagaatcctaaggttgcatggccaccaagtttcacctggtaagttcaaagatttcaccaccttataaaga |
37959103 |
T |
|
| Q |
310 |
gtaaaatgagaaattaagaaaattgata--tttcaatttgatcataatttattatgtatgcatgcatactatcaattaataatattttcgtcaataattg |
407 |
Q |
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| T |
37959104 |
gtaaaatgagaaattaaggtaattgatatttttaaatttgatcataatttattatgtatgcccacataataccaattattaatattttcgtcaataattg |
37959203 |
T |
|
| Q |
408 |
atattaattagt |
419 |
Q |
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|||||||||||| |
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| T |
37959204 |
atattaattagt |
37959215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 37958809 - 37958863
Alignment:
| Q |
23 |
tgtgaattatgtgtcaaggtacacacaaaataagttgatttacaatttgcaaata |
77 |
Q |
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|||| |||||||||||||||||| | | |||||||||||||||||||||||||| |
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| T |
37958809 |
tgtggattatgtgtcaaggtacataaatgataagttgatttacaatttgcaaata |
37958863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 206 - 409
Target Start/End: Complemental strand, 12890 - 12689
Alignment:
| Q |
206 |
gaggttcaagatatagatgacacaacaatgggatt-agactgcttaggttacatggccaccaagtttcacccggtaagttgaaagatttcaccacattat |
304 |
Q |
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||||||||||||||| |||| ||| |||||||||| ||| | || ||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
12890 |
gaggttcaagatataaatgatacagcaatgggatttagaatcctaaggttgcatggccaccaagtttcacccggtaagttcttagatttcaccaacttat |
12791 |
T |
|
| Q |
305 |
aaagtgtaaaatgagaaattaagaaaattgatatttcaatttgatcataatttattatgtatgcatgcatactatcaattaataatattttcgtcaataa |
404 |
Q |
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| T |
12790 |
aaagagtaaaatgagaaattaag---gttgatatttcaatttgaaaataatttattatgtatgcgcgaatactatcaattattaatgttgtcatcaataa |
12694 |
T |
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| Q |
405 |
ttgat |
409 |
Q |
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||||| |
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| T |
12693 |
ttgat |
12689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 409
Target Start/End: Original strand, 1802 - 1906
Alignment:
| Q |
302 |
tataaagtgtaaaatgagaaattaagaaaattgatatttcaatttgatcataatttattatgtatgcatgcatactatcaattaataatattttcgtcaa |
401 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | ||| ||||||||| |||| || || |||| |
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| T |
1802 |
tataaagagtaaaatgagaaattaagg---ttgatatttcaatttgaaaataatttattatgtatgcgcgaatattatcaattattaatgttgtcatcaa |
1898 |
T |
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| Q |
402 |
taattgat |
409 |
Q |
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|||||||| |
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| T |
1899 |
taattgat |
1906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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