View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_high_17 (Length: 391)
Name: NF5565_high_17
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 69 - 382
Target Start/End: Original strand, 3237335 - 3237648
Alignment:
| Q |
69 |
tgaatacacactgtgatgcttctctttactgtggagtttggacaagtttagaataccatgatggaatactttgttatcatatccaatccaagatttttaa |
168 |
Q |
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| T |
3237335 |
tgaatacacactttgatagttctttttactgtggagtttgtacaagtttagaatggaatgatggaatactttgttatcatatccaatccaagatttttaa |
3237434 |
T |
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| Q |
169 |
ctgcttccatagatactttaaatttctttacatttgctttgcaccttgaaaattcatctcacagaagttatgctaggcttgaatgttgaatgagttcttt |
268 |
Q |
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| T |
3237435 |
ctgcttacatagatactttaaatttctgtacatttgctttgcaccttgaaaattcatctcacagaagttatgctaggcttgaatgttgaatgagttcttt |
3237534 |
T |
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| Q |
269 |
tactatcaaacagtagttggtcaaaagtaatgagttactatttatagcactttatcccctccattggtttgtcagattggacatttagaatgcacattat |
368 |
Q |
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| T |
3237535 |
tactgtcaaatagtagttgctcaagaataacgagtcacaatttatagcactttagctcctcttttggttagtcagattgaaaatttagaatgcacattgt |
3237634 |
T |
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| Q |
369 |
gtgtatagaattat |
382 |
Q |
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| T |
3237635 |
gtgtatagaattat |
3237648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 3228927 - 3228967
Alignment:
| Q |
17 |
aattcaaaccaaacaccaacaataacaaacccaaacctgct |
57 |
Q |
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| T |
3228927 |
aattcaaaccaaacaccaacaataacaaacccaaacctgct |
3228967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 39931067 - 39930980
Alignment:
| Q |
181 |
atactttaaatttctttacatttgctttgcaccttgaaaa-ttcatctcacagaagttatgctaggc-ttgaatgttgaatgagttcttt |
268 |
Q |
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|||||||||||| ||||||||||||||| ||||| ||||| ||||||| || |||||||||||||| ||||| | |||| ||||||||| |
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| T |
39931067 |
atactttaaattcctttacatttgctttccacctggaaaatttcatctaac--aagttatgctaggctttgaaagatgaacgagttcttt |
39930980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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