View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5565_high_31 (Length: 273)

Name: NF5565_high_31
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5565_high_31
NF5565_high_31
[»] chr2 (11 HSPs)
chr2 (9-161)||(2474238-2474390)
chr2 (14-161)||(2469972-2470119)
chr2 (9-123)||(2458018-2458132)
chr2 (9-128)||(3063281-3063403)
chr2 (9-139)||(2462594-2462727)
chr2 (9-116)||(2466642-2466752)
chr2 (39-108)||(2471021-2471090)
chr2 (158-206)||(2474456-2474504)
chr2 (9-99)||(2486512-2486602)
chr2 (40-99)||(2478858-2478917)
chr2 (40-99)||(2483362-2483421)
[»] chr4 (1 HSPs)
chr4 (9-128)||(18015917-18016039)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 2474238 - 2474390
Alignment:
Q  9 attatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgacccacc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2474238 attatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgacccccc 2474337  T
Q  109 aggcaactatattggcgaaagaccatactaatttattcatatttgtttgtatt 161  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2474338 tggcaactatattggcgaaagaccatactaattgattcatatttgtttgtatt 2474390  T

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Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 2469972 - 2470119
Alignment:
Q  14 actcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgacccaccaggca 113  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  2469972 actcaggtggtttggagaaacacacaacggattggatgtgccaaagtgaaatgtaataacggaggaacattcattacttgcaattacgacccaccaggca 2470071  T
Q  114 actatattggcgaaagaccatactaatttattcatatttgtttgtatt 161  Q
    |||||||||||||||||||||||||| | |||||||||| ||||||||    
T  2470072 actatattggcgaaagaccatactaagtgattcatatttatttgtatt 2470119  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 2458018 - 2458132
Alignment:
Q  9 attatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgacccacc 108  Q
    |||| |||||||| ||||||||||||||||| |||||||||||||||||||| | |||| |||||||||| |||||||||| |||||||||||| |||||    
T  2458018 attacactcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatccacc 2458117  T
Q  109 aggcaactatattgg 123  Q
    |||||||||| ||||    
T  2458118 aggcaactatgttgg 2458132  T

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Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 3063403 - 3063281
Alignment:
Q  9 attatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtg---ataatggaggaacattcattacttgcaattacgaccc 105  Q
    ||||||||||||| |||||||||||| || ||||| |||||||||||||||||| |||||   ||||| |||||||||||||||| ||||||||||||||    
T  3063403 attatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgaccc 3063304  T
Q  106 accaggcaactatattggcgaaa 128  Q
    ||||||||||||| |||| ||||    
T  3063303 accaggcaactatgttggtgaaa 3063281  T

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Target: chr2; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 2462594 - 2462727
Alignment:
Q  9 attatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatg---gaggaacattcattacttgcaattacgaccc 105  Q
    ||||||| ||||| |||||||||||| || ||||| |||||||||||||||||| ||||||||||    |||||||||||||||| ||||||||||||||    
T  2462594 attatacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgaccc 2462693  T
Q  106 accaggcaactatattggcgaaagaccatactaa 139  Q
    ||||||||||||| |||| ||||  |||||||||    
T  2462694 accaggcaactatgttggtgaaaagccatactaa 2462727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 2466642 - 2466752
Alignment:
Q  9 attatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtg---ataatggaggaacattcattacttgcaattacgaccc 105  Q
    ||||||| ||||| |||||||||||| || ||||| |||||||||||||||||| |||||   ||||| |||||||||||||||| ||||||||||||||    
T  2466642 attatacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgaccc 2466741  T
Q  106 accaggcaact 116  Q
    |||||||||||    
T  2466742 accaggcaact 2466752  T

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Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 2471021 - 2471090
Alignment:
Q  39 aacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgacccacc 108  Q
    ||||| ||||||||| |||||||| ||||||||||||||| |||||||||||||||||||| ||||||||    
T  2471021 aacgtgttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgacccacc 2471090  T

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Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 2474456 - 2474504
Alignment:
Q  158 tatttttcccctactcatatataatttgtggtatttaatttaaagtgaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2474456 tatttttcccctactcatatataatttgtggtatttaatttaaagtgaa 2474504  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 2486512 - 2486602
Alignment:
Q  9 attatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaatta 99  Q
    ||||||||||||| ||||||  |||  ||  |||| ||||||||| ||||||||||||||||||||| ||  ||||  |||||||||||||    
T  2486512 attatactcaggttgtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataatggtggctcatttgttacttgcaatta 2486602  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 2478858 - 2478917
Alignment:
Q  40 acgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaatta 99  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||||||  ||||||| |||||    
T  2478858 acgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaatta 2478917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 2483362 - 2483421
Alignment:
Q  40 acgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaatta 99  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||||||  ||||||| |||||    
T  2483362 acgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaatta 2483421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 18015917 - 18016039
Alignment:
Q  9 attatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtg---ataatggaggaacattcattacttgcaattacgaccc 105  Q
    ||||||||||||| |||||||||||| || ||||| |||||||||||||||||| |||||   ||||| |||||||||||||||| ||||||||||||||    
T  18015917 attatactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgaccc 18016016  T
Q  106 accaggcaactatattggcgaaa 128  Q
    ||||||||||||| |||| ||||    
T  18016017 accaggcaactatgttggtgaaa 18016039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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