View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5565_high_35 (Length: 258)
Name: NF5565_high_35
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_high_35 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 50230112 - 50230346
Alignment:
| Q |
1 |
gcaaaaccagcacaaatctgagatcaagcaagatgaaaatgtccacattttagttaatgaaggaaaaagtgatgaattttctgagtcctttaagggtagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
50230112 |
gcaaaaccagcacaaatctgagatcaagcaagatgaaaatgtccacattttagttaatgaaggaaaaagtgatgaattttctgactcctttaagggtagg |
50230211 |
T |
|
| Q |
101 |
aaaaagtataaggatgtagctgatgcagcacaggcagcttttgaatcagctgcatatgctgcagctgctgctagagcagctgtggaactatcaagattcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50230212 |
aaaaagtataaggatgtagctgatgcagcacaggcagcttttgaatcagctgcatatgctgcagctgctgctagagcagctgtggaactatcaagattcc |
50230311 |
T |
|
| Q |
201 |
aatcacatgatcctgacgatgatgatgatcataat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
50230312 |
aatcacatgatcctgacgatgatgatgatcataat |
50230346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University