View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5565_high_37 (Length: 251)

Name: NF5565_high_37
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5565_high_37
NF5565_high_37
[»] chr4 (23 HSPs)
chr4 (1-242)||(45774124-45774364)
chr4 (1-232)||(19721469-19721701)
chr4 (1-232)||(2295502-2295733)
chr4 (1-236)||(15476506-15476744)
chr4 (1-230)||(2242644-2242876)
chr4 (1-232)||(53018332-53018559)
chr4 (1-218)||(40217706-40217923)
chr4 (14-232)||(35103284-35103508)
chr4 (1-218)||(7208285-7208501)
chr4 (1-217)||(27675587-27675809)
chr4 (1-187)||(47922766-47922957)
chr4 (1-73)||(10037711-10037783)
chr4 (1-95)||(22588269-22588363)
chr4 (162-219)||(6008346-6008403)
chr4 (162-204)||(1052463-1052505)
chr4 (155-200)||(25059454-25059499)
chr4 (1-74)||(45661954-45662027)
chr4 (160-218)||(35823518-35823576)
chr4 (46-95)||(35823309-35823358)
chr4 (155-209)||(44987419-44987471)
chr4 (1-67)||(28101768-28101834)
chr4 (180-218)||(53586545-53586583)
chr4 (1-53)||(25059147-25059199)
[»] chr7 (17 HSPs)
chr7 (1-232)||(45647991-45648218)
chr7 (2-232)||(42040220-42040451)
chr7 (1-211)||(47843529-47843743)
chr7 (1-218)||(45492312-45492532)
chr7 (1-210)||(2185504-2185719)
chr7 (2-185)||(43728101-43728285)
chr7 (51-201)||(25310819-25310971)
chr7 (1-95)||(22542698-22542792)
chr7 (1-219)||(3751258-3751477)
chr7 (110-236)||(42509296-42509420)
chr7 (154-232)||(25482522-25482600)
chr7 (162-218)||(48153175-48153229)
chr7 (167-218)||(40836532-40836583)
chr7 (162-211)||(43495674-43495723)
chr7 (167-232)||(45804972-45805037)
chr7 (11-95)||(22201376-22201459)
chr7 (11-95)||(22236362-22236445)
[»] chr5 (19 HSPs)
chr5 (1-232)||(29230840-29231072)
chr5 (1-232)||(19099810-19100043)
chr5 (1-211)||(32076295-32076508)
chr5 (1-218)||(31113757-31113976)
chr5 (105-219)||(3387422-3387536)
chr5 (28-188)||(31210640-31210802)
chr5 (104-218)||(39935755-39935869)
chr5 (27-95)||(36906863-36906930)
chr5 (25-95)||(28470110-28470180)
chr5 (158-219)||(5836647-5836708)
chr5 (162-218)||(34764588-34764644)
chr5 (11-74)||(16755842-16755905)
chr5 (162-216)||(8229435-8229489)
chr5 (162-211)||(26565106-26565155)
chr5 (27-202)||(8802598-8802779)
chr5 (162-217)||(2627881-2627936)
chr5 (173-219)||(27925683-27925729)
chr5 (1-74)||(39935904-39935977)
chr5 (164-209)||(41368761-41368806)
[»] chr1 (17 HSPs)
chr1 (1-232)||(25294398-25294630)
chr1 (1-232)||(41827802-41828033)
chr1 (1-232)||(31513389-31513612)
chr1 (1-232)||(17116378-17116612)
chr1 (1-211)||(38682679-38682889)
chr1 (104-217)||(13643915-13644028)
chr1 (27-211)||(40032784-40032968)
chr1 (154-232)||(50726780-50726858)
chr1 (122-210)||(4972959-4973047)
chr1 (1-218)||(14287161-14287383)
chr1 (1-87)||(40694122-40694210)
chr1 (122-210)||(4966835-4966923)
chr1 (162-218)||(11767567-11767621)
chr1 (162-210)||(13558634-13558682)
chr1 (139-202)||(51898835-51898897)
chr1 (171-221)||(40694070-40694120)
chr1 (1-42)||(49899480-49899521)
[»] scaffold0565 (1 HSPs)
scaffold0565 (1-232)||(8031-8262)
[»] chr8 (21 HSPs)
chr8 (11-232)||(11789147-11789368)
chr8 (14-232)||(6166562-6166783)
chr8 (20-218)||(18928341-18928539)
chr8 (25-209)||(11990896-11991084)
chr8 (1-94)||(9410136-9410228)
chr8 (163-232)||(9410058-9410127)
chr8 (26-211)||(24888553-24888740)
chr8 (108-218)||(24728428-24728538)
chr8 (105-209)||(31332499-31332603)
chr8 (26-211)||(25430173-25430359)
chr8 (1-79)||(26079544-26079622)
chr8 (154-218)||(31431302-31431366)
chr8 (162-211)||(17748796-17748845)
chr8 (1-95)||(16591186-16591282)
chr8 (104-201)||(12006858-12006959)
chr8 (162-206)||(32856173-32856217)
chr8 (1-56)||(11755476-11755531)
chr8 (162-196)||(23877286-23877320)
chr8 (37-95)||(24728353-24728411)
chr8 (178-218)||(23877331-23877371)
chr8 (1-84)||(31431088-31431172)
[»] chr3 (18 HSPs)
chr3 (1-232)||(46979116-46979347)
chr3 (1-232)||(7628952-7629191)
chr3 (162-232)||(45472727-45472797)
chr3 (105-211)||(51240843-51240948)
chr3 (65-236)||(39614871-39615043)
chr3 (1-95)||(52695358-52695453)
chr3 (1-95)||(20369032-20369127)
chr3 (155-218)||(40614963-40615026)
chr3 (162-208)||(17063888-17063934)
chr3 (1-218)||(29324225-29324442)
chr3 (162-236)||(36504944-36505020)
chr3 (162-219)||(38489651-38489708)
chr3 (1-79)||(2119131-2119207)
chr3 (27-95)||(40615116-40615184)
chr3 (31-95)||(53530484-53530547)
chr3 (173-236)||(27163964-27164027)
chr3 (162-232)||(53530625-53530695)
chr3 (158-210)||(21853838-21853890)
[»] chr6 (11 HSPs)
chr6 (1-232)||(2032113-2032350)
chr6 (1-232)||(687845-688074)
chr6 (1-217)||(32340036-32340256)
chr6 (1-217)||(22297127-22297349)
chr6 (162-218)||(7434963-7435019)
chr6 (1-95)||(22054307-22054398)
chr6 (104-218)||(8486085-8486203)
chr6 (162-210)||(2988051-2988099)
chr6 (107-208)||(12311890-12311995)
chr6 (160-211)||(10229596-10229647)
chr6 (139-218)||(12283621-12283700)
[»] chr2 (17 HSPs)
chr2 (1-232)||(42794537-42794768)
chr2 (27-218)||(30382597-30382788)
chr2 (48-236)||(38140861-38141057)
chr2 (25-211)||(30485742-30485929)
chr2 (1-218)||(7017979-7018185)
chr2 (1-210)||(35306240-35306451)
chr2 (1-232)||(41324017-41324255)
chr2 (1-192)||(37272672-37272863)
chr2 (25-95)||(21813066-21813136)
chr2 (2-210)||(17328863-17329077)
chr2 (162-210)||(40498773-40498821)
chr2 (1-95)||(44364692-44364783)
chr2 (173-218)||(36467351-36467396)
chr2 (159-218)||(12599166-12599225)
chr2 (154-209)||(40083089-40083144)
chr2 (158-202)||(11457972-11458016)
chr2 (164-192)||(41952415-41952443)
[»] scaffold0495 (1 HSPs)
scaffold0495 (160-211)||(6311-6362)
[»] scaffold0027 (1 HSPs)
scaffold0027 (4-68)||(8296-8360)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 45774364 - 45774124
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||         
T  45774364 aaaatacttcaagaaaattaacaccgataactattcattattgtattattataaaagttacaatttttttaaaa-aatacatgtgatcaaaataattttt 45774266  T
Q  101 nngaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgatt 200  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||    
T  45774265 ttgaaagttttcttataaatcatattacatttttatacgttgggatatcaggagaaacatcattaaaagaactcaagacaaattttatcaaatgttggtt 45774166  T
Q  201 aactgaatcacatctctcgctatgttcatccataagtataat 242  Q
    ||||||||||| |||||||||| |||||||||||||||||||    
T  45774165 aactgaatcacctctctcgctacgttcatccataagtataat 45774124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 19721469 - 19721701
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||         
T  19721469 aaaatacttgaagaaaattaatattgattactcttcattattgtattattataaaagttacaattttttaaaaataatacatgtgatcaaaataattttt 19721568  T
Q  101 nn-gaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgat 199  Q
       ||||||||||||||||| ||||||| ||||| ||| ||| ||||||   | ||||||||||||||||||||||| ||||||||||||||||||||||    
T  19721569 tttgaaagttttcttataaaccatattaaattttcatatgttaggatattgagagaaacatcattaaaagaactcaacacaaattttatctaatgttgat 19721668  T
Q  200 taactgaatcacatctctcgctatgttcatcca 232  Q
    ||| ||||||||||||||||||| |||||||||    
T  19721669 taattgaatcacatctctcgctacgttcatcca 19721701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 2295733 - 2295502
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||| |||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||| ||||          
T  2295733 aaaatacttgaagaaaatcaacattaattactcttcattattgtattattataaaagttacaattttttaaaaattatacatgtgatcagaatattttat 2295634  T
Q  101 nngaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgatt 200  Q
       |||||||||||||||| ||||||||||||| ||| ||||||||||   | |||||||| |||||||||||||| |||||||||||||||||||||||    
T  2295633 tttaaagttttcttataaaccatattacattttcatatgttgggatattgagagaaacatcgttaaaagaactcaacacaaattttatctaatgttgatt 2295534  T
Q  201 aactgaatcacatctctcgctatgttcatcca 232  Q
    |||||||| ||||||||||||| |||||||||    
T  2295533 aactgaattacatctctcgctacgttcatcca 2295502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 15476506 - 15476744
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| || || ||||||| ||||||||||||         
T  15476506 aaaatacttgaagaaaagtaacaccgattactcttcattattgtattattataaaagttacaatttttaaacaataatacatgtgatcaaaataattttt 15476605  T
Q  101 nn---gaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttg 197  Q
         ||||||||||||||||| ||||||||||||| ||| |||||| ||||  |  ||||||||||||||||||||||  |||||||||||||||||||    
T  15476606 tttttgaaagttttcttataaaccatattacattttcataagttgggttatcgagaaaaacatcattaaaagaactcaacgcaaattttatctaatgttg 15476705  T
Q  198 attaactgaatcacatctctcgctatgttcatccataag 236  Q
    ||||| | |||||| |||||||||| |||||||||||||    
T  15476706 attaattaaatcacttctctcgctacgttcatccataag 15476744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 2242644 - 2242876
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaac-aatacatatgatcaaaataannnn 99  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||   |||||  ||||||| ||||||||||||        
T  2242644 aaaatacttgaagaaaattaacaccgattactcttcattattgtattattataaaagttacaatttaaaaaaaaataatacatgtgatcaaaataatttt 2242743  T
Q  100 nnng-aaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttga 198  Q
         |||||||| ||||||| ||| ||||||||| ||| |||||||||||  | ||||||||||||||||||||||| |||||||||||||||| ||||    
T  2242744 tttttaaagtttttttataaaccat-ttacattttcatatgttgggatatcgagagaaacatcattaaaagaactcaacacaaattttatctaatattga 2242842  T
Q  199 ttaactgaatcacatctctc--gctatgttcatc 230  Q
    ||||||||||||  ||||||  ||||||||||||    
T  2242843 ttaactgaatcatctctctcttgctatgttcatc 2242876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 53018332 - 53018559
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||||   ||||||||||||||||||| || ||||||| || |||||||||         
T  53018332 aaaatacttgaagaaaattaacattgtttactcttcattattgtattat---aaaagttacaattttttaagaataatacatgtggtcaaaataataaat 53018428  T
Q  101 nn-gaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgat 199  Q
       |||||||||||||||   ||||||||||||| ||| ||  ||| |||  | ||||||||||||||||||||||| | ||||||||| ||||||||||    
T  53018429 tttgaaagttttcttatac--catattacattttcatatgtcaggacatcgagagaaacatcattaaaagaactcaacataaattttatttaatgttgat 53018526  T
Q  200 taactgaatcacatctctcgctatgttcatcca 232  Q
    |||||||||||| | ||||||||||||||||||    
T  53018527 taactgaatcacctatctcgctatgttcatcca 53018559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 40217923 - 40217706
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaatttttt-aaaaacaatacatatgatcaaaataannnn 99  Q
    ||||||||| |||||||| |||| |||||||||||||  ||| ||||||||||||||| |||||||||| ||||| |||| ||||||| |||||||        
T  40217923 aaaatacttgaagaaaataaacattgattactcttcaagattatattattataaaagtcacaatttttttaaaaataatatatatgattaaaataaaaaa 40217824  T
Q  100 nnngaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgat 199  Q
         || |||||||||||| ||||||| ||||| ||| |||||||||||  | |||||||||||| || ||||||| |||||||||||||||||||| |    
T  40217823 atgttaaattttcttataaaccatattatattttcatatgttgggatatcgcgagaaacatcattataa-aactcaacacaaattttatctaatgttgtt 40217725  T
Q  200 taactgaatcacatctctc 218  Q
    |||||||||||||| ||||    
T  40217724 taactgaatcacatttctc 40217706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 35103284 - 35103508
Alignment:
Q  14 aaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaata------catatgatcaaaataannnnnnngaaag 107  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||      ||  |||||||||| |        ||||    
T  35103284 aaaattaacattgattactctttattattgtattattataaaagttacaatttttaaaaaataatagtagtacacgtgatcaaaatgaattttttaaaag 35103383  T
Q  108 ttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaa 207  Q
    |||| ||||||| ||||||| ||||| ||| |||||||||||  | ||||||| ||||||||||||||| ||||||||||||||||||||  ||||| ||    
T  35103384 tttttttataaaacatattatattttcatatgttgggatatcgagagaaacattattaaaagaactcaacacaaattttatctaatgttgtgtaactaaa 35103483  T
Q  208 tcacatctctcgctatgttcatcca 232  Q
    |||| |||||||||| |||| ||||    
T  35103484 tcacctctctcgctacgttcttcca 35103508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 7208285 - 7208501
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    |||||| || |||||||| |||| |||||||||||||||||  ||||||||||||| |  ||||||||||||||  |||||| |||||||||||          
T  7208285 aaaatatttgaagaaaataaacattgattactcttcattatcatattattataaaactatcaattttttaaaaatgatacatgtgatcaaaatataaaaa 7208384  T
Q  101 nngaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgatt 200  Q
      | ||  ||||||||||| ||||||| | |||||||||| ||||||||  | |||||||||||||||| |||||| | || |||||||||| |||||||    
T  7208385 atgtaaagtttcttataaaccatattata-ttttatacgtagggatatcgagagaaacatcattaaaaggactcaacaaaatttttatctaaagttgatt 7208483  T
Q  201 aactgaatcacatctctc 218  Q
    |||| ||| || ||||||    
T  7208484 aactaaattacttctctc 7208501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 27675809 - 27675587
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattat---aaaagttacaattttttaaaaacaatacatatgatcaaaataann 97  Q
    ||||||||| |||||||| |||  ||| |||||||||| ||| |||||||||   |||||| | ||||||||||||| ||||||  ||||||||||||      
T  27675809 aaaatacttgaagaaaataaactttgagtactcttcataattatattattattataaaagtcataattttttaaaaataatacacgtgatcaaaataaat 27675710  T
Q  98 nnnnng---aaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatg 194  Q
             |||||||||||||||| ||||||| ||||| ||| |||||||||||  |  || ||||||||||||||||||| ||||||||||||| ||     
T  27675709 aaaaaatgtaaagttttcttataaaccatattatattttcatatgttgggatatcgagataagcatcattaaaagaactcaacacaaattttatctgata 27675610  T
Q  195 ttgattaactgaatcacatctct 217  Q
    || ||||||| |||||| |||||    
T  27675609 ttaattaactaaatcacctctct 27675587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 47922766 - 47922957
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    |||||| || |||||||| | || ||||||||||||||||||||||||||||||||||| ||  |||||||||| ||||||| |||||||| |||         
T  47922766 aaaatatttgaagaaaataagcattgattactcttcattattgtattattataaaagtttcagatttttaaaaataatacatgtgatcaaactaaaaaaa 47922865  T
Q  101 nng-aaagttttcttataaat----catattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaatttta 187  Q
      | |||||||||||||||||    ||||||| ||| | ||| |||||||||||  | ||| | ||||||||||||||||| ||||||||||    
T  47922866 tcgtaaagttttcttataaattaaccatattatattatcatatgttgggatatcgagagaagcgtcattaaaagaactcaacacaaatttta 47922957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 10037711 - 10037783
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaa 73  Q
    ||||||||| |||||||||| || ||||||||||| |||||| ||||||||||||||| | ||||||||||||    
T  10037711 aaaatacttgaagaaaattagcattgattactctttattattatattattataaaagtcataattttttaaaa 10037783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 22588363 - 22588269
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataa 95  Q
    ||||||||| |||||||| |||| ||||||||||||||| || ||||||||||||||   ||||| ||| |||| ||||| | ||||||||||||    
T  22588363 aaaatacttgaagaaaataaacattgattactcttcattgttatattattataaaagaagcaattgttttaaaataatacttgtgatcaaaataa 22588269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 6008403 - 6008346
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctctcg 219  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||||||||| |||||||    
T  6008403 attaaaagaactcaacacaaattttatttaatgtttattaactgaatcacctctctcg 6008346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 1052505 - 1052463
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgttgattaact 204  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  1052505 attaaaagaactcaacacaaattttatctaatgttgattaact 1052463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 25059454 - 25059499
Alignment:
Q  155 aaacatcattaaaagaactcaagacaaattttatctaatgttgatt 200  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||    
T  25059454 aaacatcatcaaaagaactcaacacaaattttatctaatgttgatt 25059499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 45662027 - 45661954
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaa 74  Q
    |||||| || |||||||| | || |||||||| ||||||||| ||||||||||||||| |||||||||| ||||    
T  45662027 aaaatatttgaagaaaatcatcattgattacttttcattattatattattataaaagtcacaatttttttaaaa 45661954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 35823518 - 35823576
Alignment:
Q  160 tcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctctc 218  Q
    ||||||||||||||||| ||||||||| | ||||||||||||| |||||| | ||||||    
T  35823518 tcattaaaagaactcaacacaaattttgtataatgttgattaattgaatctcttctctc 35823576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 35823309 - 35823358
Alignment:
Q  46 ttattataaaagttacaattttttaaaaacaatacatatgatcaaaataa 95  Q
    ||||||||||||| ||||||||| ||||| ||||||| ||||||||||||    
T  35823309 ttattataaaagtcacaatttttaaaaaataatacatgtgatcaaaataa 35823358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 44987471 - 44987419
Alignment:
Q  155 aaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatc 209  Q
    ||||||||||||||||||||  |||||||||| | ||||||||||||| ||||||    
T  44987471 aaacatcattaaaagaactc--gacaaattttgtataatgttgattaattgaatc 44987419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 28101768 - 28101834
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaatttt 67  Q
    ||||||||| |||||||| | || ||||||||||| |||||| ||||| |||||| || ||||||||    
T  28101768 aaaatacttgaagaaaataagcattgattactctttattattatattagtataaatgtcacaatttt 28101834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 53586583 - 53586545
Alignment:
Q  180 aaattttatctaatgttgattaactgaatcacatctctc 218  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  53586583 aaattttatctaatattgattaactgaatcacctctctc 53586545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 25059147 - 25059199
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattata 53  Q
    ||||||||| |||||||| |||| ||| |||||||||||||| || |||||||    
T  25059147 aaaatacttgaagaaaataaacattgagtactcttcattattctactattata 25059199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 45647991 - 45648218
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||| ||||||||||| |||||||||| |||||||||||||||||| |||||||| ||||||||||||| |||||||  ||||||  |           
T  45647991 aaaatacttgaagaaaattaaaactgattactgttcattattgtattattaaaaaagttataattttttaaaaataatacatgcgatcaattt----ttt 45648086  T
Q  101 nngaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgatt 200  Q
      |||| |||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  45648087 ttgaaaattttcttataaatcatattacatttttatatgttgggatatcaagagaaacatcattaaaagaactcaagacaaattttatctaatgttgatt 45648186  T
Q  201 aactgaatcacatctctcgctatgttcatcca 232  Q
    ||||||||||| || |||||||||||||||||    
T  45648187 aactgaatcacgtccctcgctatgttcatcca 45648218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 2 - 232
Target Start/End: Original strand, 42040220 - 42040451
Alignment:
Q  2 aaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnnn 101  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||  |||| ||||||| ||||||||||||          
T  42040220 aaatacttgaagaaaattaacattgattactcttcattattgtattattataaaagttataatttttagaaaataatacatgtgatcaaaataattcatt 42040319  T
Q  102 n-gaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgatt 200  Q
      ||||||||||||||||| ||||||||||||| ||| ||||||||||   | ||||||||| ||||||||||||| |||||||||||||||||||||||    
T  42040320 ttgaaagttttcttataaagcatattacattttcatatgttgggatattgagagaaacatcaataaaagaactcaacacaaattttatctaatgttgatt 42040419  T
Q  201 aactgaatcacatctctcgctatgttcatcca 232  Q
    ||||||||||||||||||| |  |||||||||    
T  42040420 aactgaatcacatctctcgatgcgttcatcca 42040451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 47843529 - 47843743
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaa-aaacaatacatatgatcaaaat---aan 96  Q
    ||||||||| |||||||| |||| ||||||| |||||||||| || |||||||||||| |||||||||| | ||| ||||||| ||||||||||   ||     
T  47843529 aaaatacttgaagaaaataaacattgattacccttcattattatactattataaaagtcacaatttttttataaataatacatgtgatcaaaattaaaaa 47843628  T
Q  97 nnnnnngaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgtt 196  Q
           |||||||||||||||| ||||||| ||||| ||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||    
T  47843629 aaaatgtaaagttttcttataaaccatattatattttcatatgttgggatatcaagagaaacatcattaaaagaactcaacacaaattttatctaatgtt 47843728  T
Q  197 gattaactgaatcac 211  Q
    |||||||||||||||    
T  47843729 gattaactgaatcac 47843743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 45492532 - 45492312
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||| ||||||||  ||| |||||||||||||||||| | ||||||||||||| | ||||||||||||| ||||||| |||| |||||||         
T  45492532 aaaatacttgaagaaaatatacattgattactcttcattattatcttattataaaagtcataattttttaaaaataatacatgtgatgaaaataaaaaaa 45492433  T
Q  101 nngaaag-ttttcttataaatcatattacatttt--tatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttg 197  Q
       |||| |||||||||||| ||||||| | |||  |||| ||| |||||||  | |||  || ||||||||||||||| ||| ||||||||||||||||    
T  45492432 tgtaaagtttttcttataaaccatattatactttcatatatgtttggatatcgagagaagaataattaaaagaactcaacacatattttatctaatgttg 45492333  T
Q  198 attaactgaatcacatctctc 218  Q
    |||||||||||||| ||||||    
T  45492332 attaactgaatcacctctctc 45492312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 2185504 - 2185719
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||| |||||||| |||| |||||||||||||||||| | | ||||||||||| ||||||||| ||||| ||||||| |||| |||||||         
T  2185504 aaaatacttgaagaaaataaacattgattactcttcattattatctaattataaaagtcacaatttttaaaaaataatacatgtgatgaaaataaaaata 2185603  T
Q  101 nngaaag------ttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatg 194  Q
       || |      |||||||||||||||||||| ||||| ||| ||| |||||||    |||  || ||||||||||||||| |||||||||||| ||||    
T  2185604 aaaaatgtaaagtttttcttataaatcatattatattttcatatgtttggatatcgacagaagaataattaaaagaactcaacacaaattttatcaaatg 2185703  T
Q  195 ttgattaactgaatca 210  Q
    |||||||| |||||||    
T  2185704 ttgattaaatgaatca 2185719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 185
Target Start/End: Complemental strand, 43728285 - 43728101
Alignment:
Q  2 aaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnnn 101  Q
    |||||||| |||||||| |||||||||||||||| |||||| |||||||||||||||  | |||||| ||||| ||||||| ||||||||||||          
T  43728285 aaatacttaaagaaaataaacactgattactcttaattattatattattataaaagtcgcgatttttgaaaaataatacatgtgatcaaaataaaaaatg 43728186  T
Q  102 ngaaag--ttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattt 185  Q
      ||||  |||| ||||||| ||||||| ||||| ||| |||||||||||  | ||| ||||||||||| ||||||| ||||||||    
T  43728185 t-aaagtttttttttataaaccatattatattttcatatgttgggatatcgagagaagcatcattaaaaaaactcaacacaaattt 43728101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 201
Target Start/End: Original strand, 25310819 - 25310971
Alignment:
Q  51 ataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnnnng--aaagttttcttataaatcatattacatttttatacgttgggatat 148  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||          |||||||||||||| ||||||||| ||||| ||| ||||||||||    
T  25310819 ataaaagttacaattttttaaaagtaatacatgtgatcaaaataaaaaaaaatcaaaagttttcttatatatcatattatattttcatatgttgggatat 25310918  T
Q  149 caggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgatta 201  Q
       | ||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  25310919 tgagagaagcatcgttaaaagaactcaacacaaattttatctaatgttgatta 25310971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 22542698 - 22542792
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataa 95  Q
    ||||||||| |||||||| |||| |||||||||||||||||| |||| |||||||||| ||||||||||||||| ||||||| | ||||||||||    
T  22542698 aaaatacttgaagaaaataaacattgattactcttcattattatattcttataaaagtcacaattttttaaaaataatacatctaatcaaaataa 22542792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 3751258 - 3751477
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||| |||||||| | || |||||| ||||||||||| ||||||||||||||| |||| |||| | ||| ||||||| | ||||||||||         
T  3751258 aaaatacttgaagaaaataatcattgattattcttcattattatattattataaaagtcacaa-ttttaagaaaaaatacatgtaatcaaaataaaaaaa 3751356  T
Q  101 nngaaagttttcttataaatcatattacatttt--tatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttga 198  Q
       |||||||| |||| || ||||||| |||||  |||| ||| ||| ||   | ||| |||||||||||  |||||| | ||||||||| |||||||||    
T  3751357 tgaaaagtttttttatcaaccatattatattttcatatatgttaggaaattgagagaagcatcattaaaaacactcaacataaattttatttaatgttga 3751456  T
Q  199 ttaactgaatcacatctctcg 219  Q
    ||||||||||||| |||||||    
T  3751457 ttaactgaatcacctctctcg 3751477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 110 - 236
Target Start/End: Complemental strand, 42509420 - 42509296
Alignment:
Q  110 ttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatc 209  Q
    ||||| |||| ||||||| | ||| ||| |||||||||||  | ||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||      
T  42509420 ttcttctaaaccatattatactttcatatgttgggatatcgagagaagcatcattaaaagaactcaacacaaattttatctaatgttgattaattgaa-- 42509323  T
Q  210 acatctctcgctatgttcatccataag 236  Q
    |||||||||  ||  ||||||||||||    
T  42509322 acatctctctttaccttcatccataag 42509296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 25482522 - 25482600
Alignment:
Q  154 gaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctctcgctatgttcatcca 232  Q
    |||| |||||||||||||||||| | | ||||||||||||||||||||||||| |||| |||||||||| | |||||||    
T  25482522 gaaatatcattaaaagaactcaacatatattttatctaatgttgattaactgagtcacctctctcgctacgatcatcca 25482600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 48153229 - 48153175
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctctc 218  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||    
T  48153229 attaaaagaactcaaga--aattttatctaatgttgattaactgaatcacctctctc 48153175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 40836583 - 40836532
Alignment:
Q  167 aagaactcaagacaaattttatctaatgttgattaactgaatcacatctctc 218  Q
    ||||||| || |||||||||||| ||||||||||||||||||||| ||||||    
T  40836583 aagaacttaacacaaattttatcgaatgttgattaactgaatcacctctctc 40836532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 43495674 - 43495723
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 211  Q
    |||||||||||| ||  |||||||||||||||||| ||||| ||||||||    
T  43495674 attaaaagaacttaactcaaattttatctaatgttaattaaatgaatcac 43495723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 45805037 - 45804972
Alignment:
Q  167 aagaactcaagacaaattttatctaatgttgattaactgaatcacatctctcgctatgttcatcca 232  Q
    |||||||||| ||||||||||||| ||| ||||||| |||||||  ||||||| ||  ||||||||    
T  45805037 aagaactcaacacaaattttatctgatgatgattaattgaatcatctctctcgttaccttcatcca 45804972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 22201459 - 22201376
Alignment:
Q  11 aagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataa 95  Q
    |||||||| | || || |||| ||||||| || | |||||||| |||||||||||||||  ||| ||||||| ||||||||||||    
T  22201459 aagaaaataagcattggttacccttcattgttatgttattatacaagttacaatttttt-taaataatacatgtgatcaaaataa 22201376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 22236362 - 22236445
Alignment:
Q  11 aagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataa 95  Q
    |||||||| | || || |||| ||||||| || | |||||||| |||||||||||||||  ||| ||||||| ||||||||||||    
T  22236362 aagaaaataagcattggttacccttcattgttatgttattatacaagttacaatttttt-taaataatacatgtgatcaaaataa 22236445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 29230840 - 29231072
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||| ||||||||||||         
T  29230840 aaaatacttgaagaaaattaacattgattactcttcattattgtattattataaaagttataattttttcaaaataatacatgtgatcaaaataattttt 29230939  T
Q  101 nn-gaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgat 199  Q
       ||||||||||||||||| ||||||||||||| ||| ||||||||||   | |||||||||||||||||| |||| ||||||||||||||||||||||    
T  29230940 tttgaaagttttcttataaaccatattacattttcatatgttgggatattgagagaaacatcattaaaagaattcaacacaaattttatctaatgttgat 29231039  T
Q  200 taactgaatcacatctctcgctatgttcatcca 232  Q
    |||||||||||||||||||||||  ||||||||    
T  29231040 taactgaatcacatctctcgctacattcatcca 29231072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 19099810 - 19100043
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaa-acaatacatatgatcaaaataannnn 99  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| | ||||||| |||||||||||         
T  19099810 aaaatacttgaagaaaattaacaccgattactcttcattattgtattattaaaaaagttacaatttttttaaatataatacatgtgatcaaaatactttt 19099909  T
Q  100 nnn-gaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttga 198  Q
        | |||||||||||||||| |||||||||||| ||| |||||||||||    ||||||||||||||| ||||||| |||||||||||||||||||||    
T  19099910 ttttgtaagttttcttataaattatattacattttcatatgttgggatatcgaaagaaacatcattaaaaaaactcaacacaaattttatctaatgttga 19100009  T
Q  199 ttaactgaatcacatctctcgctatgttcatcca 232  Q
    ||||||||||||||||||||| || |||||||||    
T  19100010 ttaactgaatcacatctctcgttacgttcatcca 19100043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 32076295 - 32076508
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    |||| |||| |||||||| |||| ||||||||||| |||||| ||||||||||||| | ||||||||||||||| ||||||| ||||||||||||         
T  32076295 aaaagacttgaagaaaataaacattgattactctttattattatattattataaaaatcacaattttttaaaaataatacatgtgatcaaaataaataaa 32076394  T
Q  101 nng---aaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttg 197  Q
          ||||||||||| |||| ||||| | ||||| ||| |||||||||||  | |||||||||||||||||| |||| ||||||||||||||||||||    
T  32076395 aaatgtaaagttttcttttaaaccatatcatattttcatatgttgggatatcgagagaaacatcattaaaagaattcaacacaaattttatctaatgttg 32076494  T
Q  198 attaactgaatcac 211  Q
    ||||| ||||||||    
T  32076495 attaagtgaatcac 32076508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 31113757 - 31113976
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaa-ttttttaaaaacaatacatatgatcaaaataannnn 99  Q
    ||||||||| |||||||| ||||  ||||||||||||||||||| ||||||||||||| |||| ||||||||||| ||||||| |||| |||||||        
T  31113757 aaaatacttgaagaaaataaacatcgattactcttcattattgtcttattataaaagtcacaatttttttaaaaataatacatgtgatgaaaataaaaaa 31113856  T
Q  100 nnng-aaag-ttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttg 197  Q
       | |||| |||||||||||| ||||||   |||||||| ||| |||||||  | |||  || |||||||||| |||| ||||||||||||||||||||    
T  31113857 aatgtaaagcttttcttataaaccatatt-tttttttatatgtttggatatcgagagaagaataattaaaagaagtcaaaacaaattttatctaatgttg 31113955  T
Q  198 attaactgaatcacatctctc 218  Q
    |||||| ||||||| ||||||    
T  31113956 attaaccgaatcacctctctc 31113976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 219
Target Start/End: Complemental strand, 3387536 - 3387422
Alignment:
Q  105 aagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaact 204  Q
    |||||||||| |||| || |||| ||||| ||| |||||||||||  | ||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  3387536 aagttttcttttaaaccaaattatattttcatatgttgggatatcgagagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaagt 3387437  T
Q  205 gaatcacatctctcg 219  Q
    ||||||||| |||||    
T  3387436 gaatcacatatctcg 3387422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 31210640 - 31210802
Alignment:
Q  28 ttactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnnnngaaagttttcttataaatcatatta 127  Q
    ||||||||||||||| ||||||||||||||| | ||| |||| |||| ||||||| ||||||||||||        |||||||| |||| ||||||||||    
T  31210640 ttactcttcattattatattattataaaagtcaaaatgttttgaaaaaaatacatgtgatcaaaataaaagaatgtaaagtttttttatgaatcatatta 31210739  T
Q  128 catttttatacgttgggatat--caggtgaaacatcattaaaagaactcaagacaaattttat 188  Q
     | ||| ||| ||||||||||  |  | ||||||||||||||||||| ||| |||||||||||    
T  31210740 tactttcatatgttgggatataccgagagaaacatcattaaaagaacacaacacaaattttat 31210802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 104 - 218
Target Start/End: Complemental strand, 39935869 - 39935755
Alignment:
Q  104 aaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaac 203  Q
    ||||| |||||||||| ||||||| ||||| ||| ||||| ||||   | ||||||||||||||||||| ||| ||||||||||||| |||||||||||     
T  39935869 aaagtattcttataaaccatattatattttcatatgttggaatattgagagaaacatcattaaaagaacacaacacaaattttatctgatgttgattaat 39935770  T
Q  204 tgaatcacatctctc 218  Q
    || ||||||||||||    
T  39935769 tggatcacatctctc 39935755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 36906930 - 36906863
Alignment:
Q  27 attactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataa 95  Q
    |||||||||||||||| ||||||||||||||| |||| |||||||||| |||| |||||||||||||||    
T  36906930 attactcttcattattctattattataaaagtcacaa-tttttaaaaataatatatatgatcaaaataa 36906863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 28470110 - 28470180
Alignment:
Q  25 tgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataa 95  Q
    |||||| ||||||||||| ||||| ||||||||| ||||||||||||||| ||||||| |||| |||||||    
T  28470110 tgattattcttcattattatattaatataaaagtcacaattttttaaaaataatacatgtgattaaaataa 28470180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 5836708 - 5836647
Alignment:
Q  158 catcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctctcg 219  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||| |||||| | |||||||    
T  5836708 catcattaaaagaactcaacacaaattttatctaatggtgattaattgaatctcctctctcg 5836647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 34764588 - 34764644
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctctc 218  Q
    ||||||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||    
T  34764588 attaaaagaactcaacacaaattttatttaatgttgattaattgaatcacctctctc 34764644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 16755842 - 16755905
Alignment:
Q  11 aagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaa 74  Q
    |||||||| | || ||||||||||||||| || ||||||||||||||||||||||||| |||||    
T  16755842 aagaaaataagcattgattactcttcattgttatattattataaaagttacaatttttaaaaaa 16755905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 8229489 - 8229435
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctc 216  Q
    ||||||| ||||||| |||||||||||||||||||||||||| ||||||| ||||    
T  8229489 attaaaaaaactcaacacaaattttatctaatgttgattaaccgaatcacctctc 8229435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 26565155 - 26565106
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 211  Q
    ||||||||||||||| | |||||||||||||| |||||||||||||||||    
T  26565155 attaaaagaactcaacataaattttatctaatattgattaactgaatcac 26565106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 8802598 - 8802779
Alignment:
Q  27 attactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnnnn--gaaagttttcttataaatcata 124  Q
    |||||||||||||||| ||||||||||||| | ||| ||||||||||| || |||| |||| |||||||         | ||  |||| |||||||||||    
T  8802598 attactcttcattattatattattataaaattcacacttttttaaaaataaaacatgtgataaaaataaataaaaaatgtaaagtttcgtataaatcata 8802697  T
Q  125 ttacatttttatac----gttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaa 202  Q
    ||| |||||||| |    ||| ||||||||   ||| |||||| |||||||||||| ||||||||| | |||| ||||||||    
T  8802698 ttatatttttattcatatgttaggatatcaatagaagcatcatcaaaagaactcaacacaaattttgtttaatattgattaa 8802779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 2627881 - 2627936
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctct 217  Q
    ||||||| ||||||| ||||||||||| ||||||||||||| |||||||| |||||    
T  2627881 attaaaataactcaacacaaattttatttaatgttgattaattgaatcacctctct 2627936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 27925729 - 27925683
Alignment:
Q  173 tcaagacaaattttatctaatgttgattaactgaatcacatctctcg 219  Q
    |||| ||||||||||||||||||||||||| |||||||  |||||||    
T  27925729 tcaacacaaattttatctaatgttgattaattgaatcatctctctcg 27925683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 39935977 - 39935904
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaa 74  Q
    |||| |||| ||| |||| |||| |||||||||   |||||| ||||||||||||||| ||||||| |||||||    
T  39935977 aaaaaacttgaaggaaataaacattgattactccctattattatattattataaaagtcacaatttcttaaaaa 39935904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 41368806 - 41368761
Alignment:
Q  164 taaaagaactcaagacaaattttatctaatgttgattaactgaatc 209  Q
    |||||||||||||   ||||||||| ||||||||||||||||||||    
T  41368806 taaaagaactcaacttaaattttatttaatgttgattaactgaatc 41368761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 25294398 - 25294630
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |         
T  25294398 aaaatacttcaagaaaattaacattgattactcttcattattgtattattataaaagttacaatttttaaaaaataatacatgtgatcaaaatgattttt 25294497  T
Q  101 nn-gaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgat 199  Q
       ||||||||||||||||| ||||||||||||| ||  ||||| ||||   | |||||||||||||||||| |||| ||||||||||||||||||||||    
T  25294498 tttgaaagttttcttataaaccatattacattttcatgtgttggaatattgagagaaacatcattaaaagaattcaacacaaattttatctaatgttgat 25294597  T
Q  200 taactgaatcacatctctcgctatgttcatcca 232  Q
    |||||||||||||| ||||||||||||||||||    
T  25294598 taactgaatcacatatctcgctatgttcatcca 25294630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 41828033 - 41827802
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||| |||||||||| || | |||||||||||||||||||| || |||||||||||||||||  ||||| ||||||| ||||||||||||         
T  41828033 aaaatacttgaagaaaattagcattaattactcttcattattgtat-ataataaaagttacaattttaaaaaaataatacatgtgatcaaaataatattt 41827935  T
Q  101 nn-gaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgat 199  Q
       ||||||||||||||||| ||||||||||||| ||| | ||||||||   | ||||||||||||||||| | ||| ||||||||||||||||||||||    
T  41827934 tttgaaagttttcttataaaccatattacattttcatatgctgggatattgagagaaacatcattaaaagatcccaacacaaattttatctaatgttgat 41827835  T
Q  200 taactgaatcacatctctcgctatgttcatcca 232  Q
    |||||||||||||| |||||||| |||||||||    
T  41827834 taactgaatcacatttctcgctacgttcatcca 41827802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 31513389 - 31513612
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataa-nnnn 99  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |  |||||||||         
T  31513389 aaaatacttgaagaaaattaacattgattactcttcattattgtattattataaaagttacaatttttaaaaaataatacatgttgtcaaaataatttgt 31513488  T
Q  100 nnngaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgat 199  Q
       ||||||||||||||||| ||||||||||||| ||| ||||||||||   | |||||||||||||||||| ||   |||     | ||||||||||||    
T  31513489 tttgaaagttttcttataaaccatattacattttcatatgttgggatattgagagaaacatcattaaaagaa-tc---aca-----tctctaatgttgat 31513579  T
Q  200 taactgaatcacatctctcgctatgttcatcca 232  Q
    |||||||||||||||||||| || | |||||||    
T  31513580 taactgaatcacatctctcgttacgatcatcca 31513612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 17116612 - 17116378
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||| ||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||  |           
T  17116612 aaaatacttaaagaaaattaatattaattactcttcattattgtattattataaaagttacaattttttaaaaataatatatgtgatcaatttttttttt 17116513  T
Q  101 nng----aaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgtt 196  Q
           |||||||  ||||||| |||||||||| || ||| ||||||||||   | ||||||| ||||||||||||||| |||||||||||||||||||    
T  17116512 tttttttaaagtttg-ttataaaccatattacatattcatatgttgggatattgagagaaacataattaaaagaactcaacacaaattttatctaatgtt 17116414  T
Q  197 gattaactgaatcacatctctcgctatgttcatcca 232  Q
    |||||||| |||||||||||||| || |||||||||    
T  17116413 gattaactaaatcacatctctcgttacgttcatcca 17116378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 38682679 - 38682889
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||| |||||||| |||| |||||||||||||| ||| | |||||||||| || ||||||||  ||||| |||| ||||||||||||||          
T  38682679 aaaatacttgaagaaaataaacattgattactcttcataattatcttattataaatgtcacaatttta-aaaaataataaatatgatcaaaatataaaaa 38682777  T
Q  101 nng-aaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgat 199  Q
      | |||||||||||||||| ||||||| ||||||| | |||||||||||  | ||||||| || |||||||||||| ||||||||||||||||||||||    
T  38682778 atgtaaagttttcttataaaccatattatatttttaaatgttgggatatcgagagaaacataatgaaaagaactcaacacaaattttatctaatgttgat 38682877  T
Q  200 taactgaatcac 211  Q
    || |||||||||    
T  38682878 tagctgaatcac 38682889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 13644028 - 13643915
Alignment:
Q  104 aaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaac 203  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||| |  || ||||||||||||||||||| ||||||||||||||||||||| |||     
T  13644028 aaagttttcttataaatcatattatattttcatatgttgggatatcaagataagcatcattaaaagaactcaacacaaattttatctaatgttgaataat 13643929  T
Q  204 tgaatcacatctct 217  Q
    |||||||| |||||    
T  13643928 tgaatcacctctct 13643915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 211
Target Start/End: Complemental strand, 40032968 - 40032784
Alignment:
Q  27 attactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnnnngaaagttttcttataaatcatatt 126  Q
    ||||||||||||||||  |||||||||||||| |||||||||  |||| ||||||| || |||||||||        || |||||| ||||||    |||    
T  40032968 attactcttcattattaaattattataaaagtaacaatttttacaaaataatacatgtgctcaaaataaaaaaatgtaatgttttcgtataaactgcatt 40032869  T
Q  127 acatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 211  Q
    | ||||| ||| |||||||||||  |  |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  40032868 atattttcatatgttgggatatcgagaaaaacatcattaaaagaactcaacacaaattttatataatgttgattaactgaatcac 40032784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 50726858 - 50726780
Alignment:
Q  154 gaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctctcgctatgttcatcca 232  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50726858 gaaacatcattaaaagaattcaacacaaattttatctaatgttgattaactgaatcacatctctcgctacgttcatcca 50726780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 4972959 - 4973047
Alignment:
Q  122 atattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatca 210  Q
    |||||| ||||||||| ||||||||||   | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4972959 atattatatttttatatgttgggatattgagagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaatca 4973047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 14287383 - 14287161
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||| ||||||||  ||| ||||||||||| |||||| | | ||||||||||| ||||||||||||||| ||||||| |||| |||||||         
T  14287383 aaaatacttgaagaaaatatacattgattactctttattattatctaattataaaagtcacaattttttaaaaataatacatgtgatgaaaataaaaaaa 14287284  T
Q  101 nng-aaag-ttttcttataaatcatattacatttt--tatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatg-t 195  Q
      | |||| |||||||||||| ||||||| | |||  |||| ||| |||||||  | |||  || ||||||||||||||| ||| ||||||||||||| |    
T  14287283 atgtaaagtttttcttataaaccatattatactttcatatatgtttggatatcgagagaagaataattaaaagaactcaacacatattttatctaatgtt 14287184  T
Q  196 tgattaactgaatcacatctctc 218  Q
    ||||||| |||||||| ||||||    
T  14287183 tgattaattgaatcacctctctc 14287161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 40694210 - 40694122
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaatt--ttttaaaaacaatacatatgat 87  Q
    ||||||||| ||||||||||| | |||||||||||||||||||||||||||||||| ||||||||  |||| |||| ||||||||||||    
T  40694210 aaaatacttgaagaaaattaatattgattactcttcattattgtattattataaaatttacaatttttttttaaaataatacatatgat 40694122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 4966923 - 4966835
Alignment:
Q  122 atattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatca 210  Q
    |||||| ||||| ||| ||||||||||   | ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  4966923 atattatattttcatatgttgggatattgagagaaacatcattaaaagaactcaacacaaattttatttaatgttgattaactgaatca 4966835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 11767567 - 11767621
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctctc 218  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||    
T  11767567 attaaaagaactcaa--caaattttatctaatgttgattaactgaatcacatttctc 11767621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 13558682 - 13558634
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgttgattaactgaatca 210  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  13558682 attaaaagaactcaacacacattttatctaatgttgattaactgaatca 13558634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 51898835 - 51898897
Alignment:
Q  139 gttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaa 202  Q
    ||||||||||||   ||||||||||||||||||||||| |||| |||| |||||||||||||||    
T  51898835 gttgggatatcaatagaaacatcattaaaagaactcaa-acaatttttgtctaatgttgattaa 51898897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 40694120 - 40694070
Alignment:
Q  171 actcaagacaaattttatctaatgttgattaactgaatcacatctctcgct 221  Q
    |||||| | |||||||||||||| |||||||||||||| ||||||||||||    
T  40694120 actcaacataaattttatctaatattgattaactgaatgacatctctcgct 40694070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 49899521 - 49899480
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattatt 42  Q
    ||||||||| |||||||| |||| ||||||||||||||||||    
T  49899521 aaaatacttaaagaaaataaacattgattactcttcattatt 49899480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 8262 - 8031
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| || |||||||||         
T  8262 aaaatacttgaagaaaattaacattgattactcttcattattgtattattataaaagttataattttttaaaaataatacatgtggtcaaaataattttt 8163  T
Q  101 nngaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgatt 200  Q
      ||||||||||||||||||| ||||||||||| ||| |||||||| |   | |||||||| |||||||||| ||| |||||||||||||||| ||||||    
T  8162 ttgaaagttttcttataaatcgtattacattttcatatgttgggatgttgagagaaacatcgttaaaagaacccaacacaaattttatctaattttgatt 8063  T
Q  201 aactgaatcacatctctcgctatgttcatcca 232  Q
    |||||||||||||||||||||| |||||||||    
T  8062 aactgaatcacatctctcgctacgttcatcca 8031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 11789147 - 11789368
Alignment:
Q  11 aagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnnnn--gaaagt 108  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||          ||||||    
T  11789147 aagaaaattaacattg--tactcttcattattgtattattataaaagttataattttttaaaaataatacatgtgatcaaaatatattttttttgaaagt 11789244  T
Q  109 tttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaat 208  Q
    ||||||||||| ||||||||||||| ||| ||||||||||   | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11789245 tttcttataaaccatattacattttcatatgttgggatattgagagaaacatcattaaaagaactcaacacaaattttatctaatgttgattaactgaat 11789344  T
Q  209 cacatctctcgctatgttcatcca 232  Q
    ||||||||||||||||||||||||    
T  11789345 cacatctctcgctatgttcatcca 11789368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 6166783 - 6166562
Alignment:
Q  14 aaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatca---aaataannnnnnngaaagttt 110  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| | ||||| |||| |   ||||||        ||| |||    
T  6166783 aaaattaacactgattactctttattattgtattattataaaagatacaatttttaaaaaatagtacatgtgattattaaaataaattttttaaaaattt 6166684  T
Q  111 tcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatca 210  Q
    ||||||||||||||||||||||| ||| | || |||||   | |||||||||||||||||||| || |  |||||||| ||||||||  |||||||||||    
T  6166683 tcttataaatcatattacattttcatatgatgtgatattgagagaaacatcattaaaagaacttaacattaattttatttaatgttgtctaactgaatca 6166584  T
Q  211 catctctcgctatgttcatcca 232  Q
    | |||||||||| |||| ||||    
T  6166583 cctctctcgctacgttcttcca 6166562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 18928341 - 18928539
Alignment:
Q  20 aacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnnnngaaagttttcttataaa 119  Q
    |||| |||||| |||| |||||| ||||| ||||||||| | ||||||  ||||| ||||||| ||||||||||||        ||||||||||||||||    
T  18928341 aacattgattattctttattattatattaatataaaagtcaaaattttacaaaaataatacatgtgatcaaaataaaaaaatgtaaagttttcttataaa 18928440  T
Q  120 tcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctctc 218  Q
     ||||||| ||||| ||| |||  ||||||  ||||| ||| ||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||    
T  18928441 ccatattatattttcatatgttcagatatcgagtgaagcataattaaaagaactcaacacaaattttatttaatattgattaactgaatcacatctctc 18928539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 209
Target Start/End: Complemental strand, 11991084 - 11990896
Alignment:
Q  25 tgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnnnngaaagttttcttataaatcata 124  Q
    |||||||||||||||||| | ||||||||||||| |||||||||| |||| || || | ||||||||||||        |||||||||||||||| ||||    
T  11991084 tgattactcttcattattattttattataaaagtcacaatttttttaaaataaaacgtgtgatcaaaataaaaatatgtaaagttttcttataaaccata 11990985  T
Q  125 ttacatttttat----acgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatc 209  Q
    ||| ||||||||    | ||||||||||||    || |||||||||||||| |||| ||||||||| |||||| |||||||| ||||||    
T  11990984 ttatatttttattcaaatgttgggatatcaacataagcatcattaaaagaattcaatacaaattttgtctaatattgattaattgaatc 11990896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 9410228 - 9410136
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaata 94  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||  |||||| |||||||||||    
T  9410228 aaaatacttgaagaaaattaacattgattactcttcattattgtattattgtaaaagttacaat-ttttaaaaattatacatgtgatcaaaata 9410136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 9410127 - 9410058
Alignment:
Q  163 ttaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctctcgctatgttcatcca 232  Q
    |||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  9410127 ttaaaagaactcaacacaaaatttatctaatattgattaactgaatcacatctctcgctacgttcatcca 9410058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 211
Target Start/End: Original strand, 24888553 - 24888740
Alignment:
Q  26 gattactcttcattattgtattattataaaagttacaatttttt--aaaaacaatacatatgatcaaaataannnnnnngaaagttttcttataaatcat 123  Q
    |||||||||||| |||| | ||||||||||||| ||||||||||  ||||||||||||| |||| |||  ||        || ||||||||||||| |||    
T  24888553 gattactcttcactattatgttattataaaagtcacaattttttttaaaaacaatacatgtgattaaatgaaaaaatgtaaaggttttcttataaaccat 24888652  T
Q  124 attacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 211  Q
    |||| ||||| ||| |||  | ||||  | |||  || ||||||||||||||| | | ||||||||||||||||||||||||||||||    
T  24888653 attatattttcatatgttttgttatcgagagaagaataattaaaagaactcaacatatattttatctaatgttgattaactgaatcac 24888740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 24728428 - 24728538
Alignment:
Q  108 ttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaa 207  Q
    |||||||||||| ||||||| ||||| ||| ||| |||||||  | |||  || |||||||||| |||| | ||||||||||||||||||||||||||||    
T  24728428 ttttcttataaaccatattatattttcatatgtttggatatcgagagaagaataattaaaagaagtcaacataaattttatctaatgttgattaactgaa 24728527  T
Q  208 tcacatctctc 218  Q
    |||| ||||||    
T  24728528 tcacctctctc 24728538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 209
Target Start/End: Original strand, 31332499 - 31332603
Alignment:
Q  105 aagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaact 204  Q
    ||||||||||||||| |||||||  |||||||| ||||||||||     ||||||| ||||||| || |||| ||||||||||||||||||||||||| |    
T  31332499 aagttttcttataaaccatattatttttttatatgttgggatatggacagaaacattattaaaaaaattcaacacaaattttatctaatgttgattaatt 31332598  T
Q  205 gaatc 209  Q
    |||||    
T  31332599 gaatc 31332603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 211
Target Start/End: Complemental strand, 25430359 - 25430173
Alignment:
Q  26 gattactcttcattattgtattattataaaagttacaatttttta-aaaacaatacatatgatcaaaataannnnnnngaaagttttcttataaatcata 124  Q
    |||||||| |||||||| | ||||||||||||  ||||||||||  |||||||||||| |||| |||  ||        || ||||||||||||| ||||    
T  25430359 gattactcgtcattattattttattataaaagacacaattttttttaaaacaatacatgtgattaaatgaaaaaatgtaaaggttttcttataaaccata 25430260  T
Q  125 ttacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 211  Q
    ||| ||||| ||| |||  | ||||  | |||  || ||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  25430259 ttatattttcatatgttttgttatcgagagaagaataattaaaagaactcaacacatattttatttaatgttgattaactgaatcac 25430173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 26079622 - 26079544
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaata 79  Q
    ||||||||| |||||||| |  | |||||||||||||||||| ||||||||||||||| ||||||||| ||||| ||||    
T  26079622 aaaatacttgaagaaaatcacaattgattactcttcattattatattattataaaagtcacaatttttaaaaaataata 26079544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 31431302 - 31431366
Alignment:
Q  154 gaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctctc 218  Q
    ||||||||||||||||||||||| ||||||||| |||||| |||||||  |||||| ||||||||    
T  31431302 gaaacatcattaaaagaactcaacacaaattttgtctaatcttgattatttgaatctcatctctc 31431366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 17748796 - 17748845
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 211  Q
    |||||||||||| || ||||||||||||||||||||||||||| ||||||    
T  17748796 attaaaagaactgaacacaaattttatctaatgttgattaacttaatcac 17748845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 16591186 - 16591282
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaa--ttttttaaaaacaatacatatgatcaaaataa 95  Q
    ||||||||| |||||||| |  | |||||||||||||||||| ||||||||||||| |  |||  |||||| |||| |||| || ||||||||||||    
T  16591186 aaaatacttgaagaaaatcagtattgattactcttcattattatattattataaaactcgcaatctttttttaaaataatagatgtgatcaaaataa 16591282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 12006959 - 12006858
Alignment:
Q  104 aaagttttcttataaatcatattacatttttatac----gttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgat 199  Q
    ||||||||||||||||  |||||| |||||||| |    |||||||||||| |  || ||| ||||||||||||| | ||||||||| || |||||||||    
T  12006959 aaagttttcttataaactatattatatttttattcatatgttgggatatcaagaaaagcataattaaaagaactctacacaaattttgtccaatgttgat 12006860  T
Q  200 ta 201  Q
    ||    
T  12006859 ta 12006858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 32856217 - 32856173
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgttgattaactga 206  Q
    |||||||||| |||| || ||||||||||||||||||||||||||    
T  32856217 attaaaagaattcaacacgaattttatctaatgttgattaactga 32856173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11755476 - 11755531
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaa 56  Q
    ||||||||| |||||||| |||| ||||||||||| |||||| || ||||||||||    
T  11755476 aaaatacttgaagaaaataaacattgattactcttgattattatactattataaaa 11755531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Original strand, 23877286 - 23877320
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgtt 196  Q
    ||||||||||||||| |||||||||||||||||||    
T  23877286 attaaaagaactcaacacaaattttatctaatgtt 23877320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 24728353 - 24728411
Alignment:
Q  37 attattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataa 95  Q
    |||||| | ||||||||||||| ||||||||||||||| |||| || |||| |||||||    
T  24728353 attattatcttattataaaagtcacaattttttaaaaataatatatgtgatgaaaataa 24728411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 23877331 - 23877371
Alignment:
Q  178 acaaattttatctaatgttgattaactgaatcacatctctc 218  Q
    ||||||||||||||||||| |||||||||| ||| ||||||    
T  23877331 acaaattttatctaatgttaattaactgaaccacctctctc 23877371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 31431088 - 31431172
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagt-tacaattttttaaaaacaatacatat 84  Q
    ||||||||| |||||||| | || |||||| |||| || ||| |||||||||||||||  |||| |||||||||| |||| ||||    
T  31431088 aaaatacttgaagaaaataagcattgattaatctttatgattatattattataaaagtcaacaactttttaaaaataatatatat 31431172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 46979116 - 46979347
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||         
T  46979116 aaaatactagaagaaaagtaacactaattactcttcattattgtattattataaaagttacaatttttaaaaaataatacatgtgatcaaaataattttt 46979215  T
Q  101 nngaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgatt 200  Q
      ||||||||||||||||| ||||||||||||| ||| |||| ||||||  | |||||||||||||||||||||||  |||||||||| | |||||||||    
T  46979216 ttgaaagttttcttataaaccatattacattttcatatgttgcgatatcgagagaaacatcattaaaagaactcaacgcaaattttatgtgatgttgatt 46979315  T
Q  201 aactgaatcacatctctcgctatgttcatcca 232  Q
    |||| |||||| |||||||||| |||||||||    
T  46979316 aactaaatcacctctctcgctacgttcatcca 46979347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 7628952 - 7629191
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaa-------tacatatgatcaaaat 93  Q
    |||| |||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||   ||||| ||       ||||| ||||||||||    
T  7628952 aaaacacttgaagaaaattaacattgattactcttcattattatattattataaaagttacattttaaaaaaaaaaaaaaataatacatgtgatcaaaat 7629051  T
Q  94 aannnnnnn-gaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaa 192  Q
    ||        ||||||||||||||||| ||||||||||||| ||| ||||||||||  || |||||||||||| ||||| ||||  |||||||||||||     
T  7629052 aattttttttgaaagttttcttataaaccatattacattttaatatgttgggatattgggagaaacatcattacaagaaatcaatgcaaattttatctat 7629151  T
Q  193 tgttgattaactgaatcacatctctcgctatgttcatcca 232  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  7629152 tgttgattaactgaatcacatctctcgctgtggtcatcca 7629191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 45472797 - 45472727
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctctcgctatgttcatcca 232  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||| ||  ||||||||    
T  45472797 attaaaagaacccaacacaaattttatctaatgttgattaactgaatcacctctctcgttaccttcatcca 45472727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 211
Target Start/End: Original strand, 51240843 - 51240948
Alignment:
Q  105 aagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaact 204  Q
    |||||||||| |||| ||||||| ||||| ||| |||||||||||  |  ||||||| | |||||||||||| |||||||||||||||| |||||||| |    
T  51240843 aagttttcttgtaaaccatattatattttcatatgttgggatatcgaga-aaacatcgtaaaaagaactcaacacaaattttatctaatattgattaatt 51240941  T
Q  205 gaatcac 211  Q
    |||||||    
T  51240942 gaatcac 51240948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 236
Target Start/End: Original strand, 39614871 - 39615043
Alignment:
Q  65 tttttaaaaacaatacatatgatcaaaataannnnnnngaaagttttctt-ataaatcatattacatttttatacgttgggatatcaggtgaaacatcat 163  Q
    |||||||||| ||||||||||||||||||||        |||||||| || |||||   ||||| ||||| ||| ||||||| | |  |  |||||| ||    
T  39614871 tttttaaaaataatacatatgatcaaaataaaaaaatgtaaagtttttttgataaaatttattatattttcatatgttgggagaacgagaaaaacattat 39614970  T
Q  164 taaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctctcgctatgttcatccataag 236  Q
    ||||||||||||  ||||||||||||||| ||||||||| | ||||| |||||||| ||  ||||||||||||    
T  39614971 taaaagaactcatcacaaattttatctaacgttgattaattaaatcatatctctcgttaccttcatccataag 39615043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 52695358 - 52695453
Alignment:
Q  1 aaaatacttcaagaaaattaa-cactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataa 95  Q
    ||||||||| ||||||| ||| || ||||||||||| |||||| |||||||||||| || |||||||||| |||| |||| || ||||||||||||    
T  52695358 aaaatacttgaagaaaaataagcattgattactctttattattatattattataaatgtcacaatttttttaaaataatagatgtgatcaaaataa 52695453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 20369032 - 20369127
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaa-aaacaatacatatgatcaaaataa 95  Q
    ||||||||| |||||||| | || ||||||||||| |||||| ||| ||||||||||| ||||| |||||| ||| ||||||| |||| |||||||    
T  20369032 aaaatacttgaagaaaataagcattgattactctttattattatatcattataaaagtcacaatattttaagaaataatacatgtgattaaaataa 20369127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 40615026 - 40614963
Alignment:
Q  155 aaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctctc 218  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||||||| || ||||| ||||||    
T  40615026 aaacatcattaaaagaacgcaacacaaattttatataatgttgattaattggatcacttctctc 40614963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 17063888 - 17063934
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgttgattaactgaat 208  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||    
T  17063888 attaaaggaactcaacacaaattttatctaatgttgattaactgaat 17063934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 29324442 - 29324225
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||| || ||||| |||| | |||| || ||||||||  ||||||||||| || ||||||||||||||  ||||||| ||||||||||||         
T  29324442 aaaatacttgaaaaaaataaacattaattagtcatcattattaaattattataaa-gtcacaattttttaaaat-aatacatgtgatcaaaataaaaaaa 29324345  T
Q  101 nnga-aagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcatt-aaaagaactcaagacaaattttatctaatgttga 198  Q
       | ||  |||||||||||  |||||| ||||  ||| |||||||||||  | ||||||||||| |||| || |||| | ||||||||||||||||  |    
T  29324344 tatataaaatttcttataaacaatattatatttacatatgttgggatatcgagagaaacatcattaaaaaaaaatcaacataaattttatctaatgtgta 29324245  T
Q  199 ttaactgaatcacatctctc 218  Q
    |||||| |||||| ||||||    
T  29324244 ttaacttaatcacttctctc 29324225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 36505020 - 36504944
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcac--atctctcgctatgttcatccataag 236  Q
    ||||||||||||||| ||||||||||||||||||||| || | |||||||   ||||||| ||| ||||||||||||    
T  36505020 attaaaagaactcaacacaaattttatctaatgttgaatatccgaatcacctctctctcgttatcttcatccataag 36504944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 38489651 - 38489708
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctctcg 219  Q
    |||||||||| |||| || ||||||||||||||||||||||||||||||  |||||||    
T  38489651 attaaaagaattcaacaccaattttatctaatgttgattaactgaatcaactctctcg 38489708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 2119207 - 2119131
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaata 79  Q
    ||||||||| |||||||| |||| |||| | ||||||||||| |||||||||||||||  ||| |||||||||| ||||    
T  2119207 aaaatacttaaagaaaataaacattgatcaatcttcattattttattattataaaagt--caaatttttaaaaataata 2119131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 40615184 - 40615116
Alignment:
Q  27 attactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataa 95  Q
    ||||||| | |||||| |||||||||||||||  |||||| ||||||| ||||| | ||||||||||||    
T  40615184 attactcattattattatattattataaaagtcgcaatttcttaaaaataatacttgtgatcaaaataa 40615116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 53530484 - 53530547
Alignment:
Q  31 ctcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataa 95  Q
    ||||| |||||| ||||||||||||||| |||| ||||| |||| ||||||| ||||||||||||    
T  53530484 ctctttattattatattattataaaagtcacaa-tttttgaaaataatacatgtgatcaaaataa 53530547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 27163964 - 27164027
Alignment:
Q  173 tcaagacaaattttatctaatgttgattaactgaatcacatctctcgctatgttcatccataag 236  Q
    |||| |||||||||||  |||||||||||| |||||||| ||||||| ||  ||||||||||||    
T  27163964 tcaacacaaattttattcaatgttgattaattgaatcacctctctcgttaccttcatccataag 27164027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 53530625 - 53530695
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctctcgctatgttcatcca 232  Q
    ||||||||||||||| ||||||||| | |||| |||||||| ||||||   ||||||| ||| ||||||||    
T  53530625 attaaaagaactcaacacaaattttgtttaatattgattaattgaatctactctctcgttatcttcatcca 53530695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 21853890 - 21853838
Alignment:
Q  158 catcattaaaagaactcaagacaaattttatctaatgttgattaactgaatca 210  Q
    ||||| ||||||||||| | ||||||||||| ||||||||||| | |||||||    
T  21853890 catcaataaaagaactctaaacaaattttatttaatgttgattgattgaatca 21853838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 2032113 - 2032350
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtatt---attataaaagttacaattttttaaaaacaatacatatgatcaaaataann 97  Q
    ||||||||| ||||||||||||  |||||||| ||||||||||||||   ||||||||||||||||||||||||||| ||||||| ||||||||||||      
T  2032113 aaaatacttgaagaaaattaacgttgattacttttcattattgtattgttattataaaagttacaattttttaaaaataatacatgtgatcaaaataatt 2032212  T
Q  98 nnnnn--gaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaa-gaactcaagacaaattttatctaatg 194  Q
           ||||||||||||||||| ||||||||||||| ||| ||| ||||||   | ||||||||||||||| |||||||| |||||||||||||||||    
T  2032213 tttttttgaaagttttcttataaaccatattacattttcatatgttaggatattgagagaaacatcattaaaaagaactcaacacaaattttatctaatg 2032312  T
Q  195 ttgattaactgaatcacatctctcgctatgttcatcca 232  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  2032313 ttgattaactgaataacatctctcgctacgttcatcca 2032350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 687845 - 688074
Alignment:
Q  1 aaaatacttcaagaaaattaacactgatta---ctcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataann 97  Q
    |||||| || ||||||||||||| ||||||   |||||||||||||||||||   |||||||||||||||||||||| ||| ||| ||||||||||||      
T  687845 aaaataattgaagaaaattaacattgattattgctcttcattattgtattat---aaaagttacaattttttaaaaataatgcatgtgatcaaaataaca 687941  T
Q  98 nnnnn-gaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgtt 196  Q
          ||||||||||||||||| ||||||||||||| ||| ||| |||||||  | ||||||||||||||||||||| | |||||||||||||||   |    
T  687942 aattttgaaagttttcttataaaccatattacattttcatatgttaggatatcgagagaaacatcattaaaagaactcgacacaaattttatctaa---t 688038  T
Q  197 gattaactgaatcacatctctcgctatgttcatcca 232  Q
    ||||||||||||||| | ||| ||||  ||||||||    
T  688039 gattaactgaatcacctttcttgctacattcatcca 688074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 32340036 - 32340256
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||| ||||||||   || || ||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| | ||||||||||         
T  32340036 aaaatacttgaagaaaatatgcattggttactcttcattattatattattataaaagtcacaattttttaaaaataatacatgtaatcaaaataaaataa 32340135  T
Q  101 nnga----aagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgtt 196  Q
       |    ||||||||||||||||| ||||| ||||| ||| |||||||||||  | ||| |||||| |||||||||||| |||||||||||||||||||    
T  32340136 aaaatgtaaagttttcttataaatcgtattatattttcatatgttgggatatcgagagaatcatcatcaaaagaactcaacacaaattttatctaatgtt 32340235  T
Q  197 gattaactgaatcacatctct 217  Q
    ||||| |||||| || |||||    
T  32340236 gattagctgaattacctctct 32340256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 22297127 - 22297349
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatg----atcaaaataan 96  Q
    ||||||||| |||||||| |||| ||||||||||| ||| || |||||||||||||||  |||||||| ||||| ||||||| ||    ||||||||||     
T  22297127 aaaatacttgaagaaaatgaacattgattactctttattgttatattattataaaagtcgcaatttttaaaaaataatacatgtgggtgatcaaaataaa 22297226  T
Q  97 nnnnnnga---aagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaat 193  Q
           |   |||||||||| |||| ||||||| ||||| ||| |||||||||||| |  || |||  |||||||||||||| | ||||||||||||||    
T  22297227 ataaaaaagtaaagttttctt-taaaccatattatattttcatatgttgggatatcaagataagcattgttaaaagaactcaacataaattttatctaat 22297325  T
Q  194 gttgattaactgaatcacatctct 217  Q
    |||||||||||||||||| |||||    
T  22297326 gttgattaactgaatcacctctct 22297349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 7435019 - 7434963
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctctc 218  Q
    ||||||||||||||| |||||| ||||||| ||||||||||||||||||| ||||||    
T  7435019 attaaaagaactcaacacaaatgttatctagtgttgattaactgaatcacctctctc 7434963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 22054398 - 22054307
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataa 95  Q
    ||||||||| |||||||| |||| || |||||||| |||||| |||||||||  |||| ||||||||||||||| || |||| ||||||||||||    
T  22054398 aaaatacttgaagaaaataaacattggttactctttattattatattattat--aagtcacaattttttaaaaataacacat-tgatcaaaataa 22054307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 218
Target Start/End: Complemental strand, 8486203 - 8486085
Alignment:
Q  104 aaagttttcttataaatcatattacattttt----atacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgat 199  Q
    |||||||||||||||| ||||||| |||||     ||| |||| ||||||| | ||| ||||||||||| || || |  |||||||| ||||||||||||    
T  8486203 aaagttttcttataaaccatattatattttccttcatatgttgagatatcaagagaagcatcattaaaataattctacgcaaattttgtctaatgttgat 8486104  T
Q  200 taactgaatcacatctctc 218  Q
    ||  |||||| ||||||||    
T  8486103 tagttgaatctcatctctc 8486085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 2988051 - 2988099
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgttgattaactgaatca 210  Q
    ||||||||||||||| ||| || ||||||||| ||||||||||||||||    
T  2988051 attaaaagaactcaacacatatattatctaatattgattaactgaatca 2988099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 12311890 - 12311995
Alignment:
Q  107 gttttcttataaatcatattacattt----ttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaa 202  Q
    ||||||||||||||||||||  ||||    | ||| ||||||||||||   ||| |||||| |||||||||||| |||| |||| | |||||||||||||    
T  12311890 gttttcttataaatcatattttatttccattcatatgttgggatatcaatagaagcatcatcaaaagaactcaacacaagttttgtttaatgttgattaa 12311989  T
Q  203 ctgaat 208  Q
     |||||    
T  12311990 ttgaat 12311995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 10229647 - 10229596
Alignment:
Q  160 tcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 211  Q
    ||||||||| |||||||   ||||||||||||||||||||||||| ||||||    
T  10229647 tcattaaaataactcaacctaaattttatctaatgttgattaactaaatcac 10229596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 12283621 - 12283700
Alignment:
Q  139 gttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctctc 218  Q
    ||||||||||||   ||| |||||||||||||| |||| |||||||||   ||||||||||||| |||||| | ||||||    
T  12283621 gttgggatatcaatagaagcatcattaaaagaattcaacacaaattttgattaatgttgattaattgaatctcctctctc 12283700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 42794537 - 42794768
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| |||| ||  |           
T  42794537 aaaatacttgaagaaaattaacattgattactcttcattattgtattattataaaagttataatttttaaaaaataatacatgtgatgaatttttatttt 42794636  T
Q  101 nngaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgatt 200  Q
        ||||||||||||||| ||||||||||||| ||| ||||||||||   | ||||||||||||||||||||||| |||||||||||||||||||||||    
T  42794637 ttttaagttttcttataaaccatattacattttcatatgttgggatattgagagaaacatcattaaaagaactcaacacaaattttatctaatgttgatt 42794736  T
Q  201 aactgaatcacatctctcgctatgttcatcca 232  Q
    |||| ||||| || |||||||| |||||||||    
T  42794737 aactaaatcatatttctcgctacgttcatcca 42794768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 27 - 218
Target Start/End: Original strand, 30382597 - 30382788
Alignment:
Q  27 attactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnnnngaaagttttcttataaatcatatt 126  Q
    ||||||||| |||||| |||||||||||||||| |||||||  ||||| ||||||  ||||||||||||         ||||||||||||||| ||||||    
T  30382597 attactctttattattatattattataaaagttgcaattttaaaaaaataatacaggtgatcaaaataaaaaaaagccaagttttcttataaaccatatt 30382696  T
Q  127 acatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctctc 218  Q
    | ||||| ||| |||||||||||  | |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  30382697 atattttcatatgttgggatatcgagagaaacatcattaaaagaattcaatacaaattttatctaatgttgattaactgaatcacatctctc 30382788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 236
Target Start/End: Complemental strand, 38141057 - 38140861
Alignment:
Q  48 attataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnnnn-gaaagttttcttataaatcatattacatttttatacgttgggat 146  Q
    ||||||||||||||||||||  ||||| |||||||  |||||||||||        ||||||||||||||||| ||||||||||||| ||| ||||||||    
T  38141057 attataaaagttacaattttaaaaaaataatacatgcgatcaaaataattttttttgaaagttttcttataaaccatattacattttcatatgttgggat 38140958  T
Q  147 atcaggtgaaacatcattaaaa-------gaactcaagacaaattttatctaatgttgattaactgaatcacatctctcgctatgttcatccataag 236  Q
    |||  |  ||| ||||||||||       |||||||| ||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  38140957 atcgagaaaaatatcattaaaatttaaaagaactcaacacaaaatttatctaatgttgattaactgaatcacctctctcgctacgttcatccataag 38140861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 30485929 - 30485742
Alignment:
Q  25 tgattactcttcattattgtattattataaaagttacaattttttaaaaac-aatacatatgatcaaaataannnnnnngaaagttttcttataaatcat 123  Q
    ||||||||||| |||||| ||||||||||||||| | ||||||| |||||  ||||| | ||||||||||||        ||||||||||||||||  ||    
T  30485929 tgattactctttattattatattattataaaagtcaaaatttttaaaaaattaatacgtgtgatcaaaataaaaaaatgtaaagttttcttataaactat 30485830  T
Q  124 attacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 211  Q
    |||| ||||| ||| ||||||||||     ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  30485829 attatattttcatatgttgggatatagaaagaaacatcattaaaagaactcaacacaaactttatctaatgttgattaattgaatcac 30485742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 7018185 - 7017979
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||| |||||||| |||| |||||||||||||||||| |||||||||||||||  |||||||| ||||| ||||||| ||||||||||||         
T  7018185 aaaatacttgaagaaaataaacattgattactcttcattattatattattataaaagt--caatttttaaaaaataatacatgtgatcaaaataaataaa 7018088  T
Q  101 nngaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttgatt 200  Q
       |||||||||||||||| ||||||| ||||| ||| |||||||| |||   ||| |||        |||||||| |||||||||||||||||||||||    
T  7018087 tgtaaagttttcttataaaccatattatattttcatatgttgggatgtca-cagaagcat--------gaactcaacacaaattttatctaatgttgatt 7017997  T
Q  201 aactgaatcacatctctc 218  Q
    ||| |||| || ||||||    
T  7017996 aaccgaattacctctctc 7017979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 35306451 - 35306240
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||| |||||||| |||| |||||||| ||||||||| ||||||||||||||| ||||||||| || || |||| || | ||||||||||         
T  35306451 aaaatacttgaagaaaataaacattgattacttttcattattatattattataaaagtgacaatttttaaataataatatatgtcatcaaaataaaaaaa 35306352  T
Q  101 nng---aaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgttg 197  Q
          |||||||||||||||| ||||||| ||||| ||| || ||||||||  | |||| ||| ||||| |||||| | ||||||||||||||||||||    
T  35306351 aaatgtaaagttttcttataaaccatattatattttcatatgtagggatatcgagagaaatatcgttaaa-gaactccacacaaattttatctaatgttg 35306253  T
Q  198 attaactgaatca 210  Q
    ||||||| |||||    
T  35306252 attaactaaatca 35306240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 41324255 - 41324017
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaat------- 93  Q
    ||||||||| || ||||| |||| ||||||| |||||||||| |||||||||||||||  |||||||||||||| ||||||| ||||||||||           
T  41324255 aaaatacttgaacaaaataaacattgattacccttcattattatattattataaaagtatcaattttttaaaaataatacatgtgatcaaaatatataaa 41324156  T
Q  94 -aannnnnnngaaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaa 192  Q
     ||        ||| |||| ||||||| ||||||| ||||| ||| |||||||||||  | |||  |||||||||||||||||| ||||||| |||||||    
T  41324155 aaaatatatataaattttttttataaaccatattatattttcatatgttgggatatcgagagaagtatcattaaaagaactcaacacaaattgtatctaa 41324056  T
Q  193 tgttgattaactgaatcacatctctcgctatgttcatcca 232  Q
    |||| || ||||||||||| ||||||| ||  ||||||||    
T  41324055 tgtt-ataaactgaatcacctctctcgttaccttcatcca 41324017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 37272672 - 37272863
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnn 100  Q
    ||||||||| || ||||| |||| |||||||||||||||||| || |||||||||| | |||||||| |||||| ||||||||||||||||||||         
T  37272672 aaaatacttgaaaaaaatgaacattgattactcttcattattataatattataaaactaacaattttgtaaaaataatacatatgatcaaaataaaaaaa 37272771  T
Q  101 nng-aaagttttcttataaatcatattacatttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaa 192  Q
      | |||||||||||||||||| ||||| | ||| ||| || ||||||||  |  ||| |||||||||||||||||| | ||||||| |||||    
T  37272772 atgtaaagttttcttataaatcttattata-tttcatatgtagggatatcgagaaaaatatcattaaaagaactcaacataaattttgtctaa 37272863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 21813136 - 21813066
Alignment:
Q  25 tgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataa 95  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| |||| ||||||| ||||||||||||    
T  21813136 tgattactcttcattattatattattataaaagtcacaatttttttaaaataatacatgtgatcaaaataa 21813066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 17329077 - 17328863
Alignment:
Q  2 aaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataannnnnn 101  Q
    |||||||| |||||||| ||||  ||||||| || |||||| | ||||||||||||| |||| |||| ||||| ||||||| |||| |||||||          
T  17329077 aaatacttgaagaaaataaacatcgattactttttattattatcttattataaaagtcacaaattttaaaaaataatacatgtgatgaaaataaaataaa 17328978  T
Q  102 nga---aagtttt-cttataaatcatatta--catttttatacgttgggatatcaggtgaaacatcattaaaagaactcaagacaaattttatctaatgt 195  Q
      |   ||||||| |||||| | |||||||  |||||| |||  || |||||||  | |||  || ||||||||||||||| ||||||||||| ||||||    
T  17328977 aaatgtaagtttttcttatagagcatattatacattttcatatctttggatatcgagagaagaataattaaaagaactcaacacaaattttatttaatgt 17328878  T
Q  196 tgattaactgaatca 210  Q
    |||||||||||||||    
T  17328877 tgattaactgaatca 17328863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 40498821 - 40498773
Alignment:
Q  162 attaaaagaactcaagacaaattttatctaatgttgattaactgaatca 210  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40498821 attaaaagaactcaacacaaattttatctaatgttgattaactgaatca 40498773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 44364783 - 44364692
Alignment:
Q  1 aaaatacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttttaaaaacaatacatatgatcaaaataa 95  Q
    ||||||||| |||||||| |||| || |||||||| |||||| |||||||||  |||| ||||||||||||||| || |||| ||||||||||||    
T  44364783 aaaatacttgaagaaaataaacattggttactctttattattatattattat--aagtcacaattttttaaaaataacacat-tgatcaaaataa 44364692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 36467396 - 36467351
Alignment:
Q  173 tcaagacaaattttatctaatgttgattaactgaatcacatctctc 218  Q
    |||| |||||||||||||| |||||||||| |||||||||||||||    
T  36467396 tcaacacaaattttatctattgttgattaattgaatcacatctctc 36467351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 12599225 - 12599166
Alignment:
Q  159 atcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcacatctctc 218  Q
    |||||||||||||| ||| |||||| || ||||||||||||||| |||||| | ||||||    
T  12599225 atcattaaaagaacacaacacaaatgttgtctaatgttgattaattgaatctcctctctc 12599166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 40083144 - 40083089
Alignment:
Q  154 gaaacatcattaaaagaactcaagacaaattttatctaatgttgattaactgaatc 209  Q
    ||||||| ||||| ||||||||| |||||||||  |||||||||||||| ||||||    
T  40083144 gaaacatgattaacagaactcaacacaaattttgcctaatgttgattaattgaatc 40083089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 11458016 - 11457972
Alignment:
Q  158 catcattaaaagaactcaagacaaattttatctaatgttgattaa 202  Q
    ||||||||||| ||| ||| ||||||||| |||||||||||||||    
T  11458016 catcattaaaataacgcaacacaaattttgtctaatgttgattaa 11457972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 192
Target Start/End: Complemental strand, 41952443 - 41952415
Alignment:
Q  164 taaaagaactcaagacaaattttatctaa 192  Q
    |||||||||||||||||||||||||||||    
T  41952443 taaaagaactcaagacaaattttatctaa 41952415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 6362 - 6311
Alignment:
Q  160 tcattaaaagaactcaagacaaattttatctaatgttgattaactgaatcac 211  Q
    ||||||||| |||||||   ||||||||||||||||||||||||| ||||||    
T  6362 tcattaaaataactcaacctaaattttatctaatgttgattaactaaatcac 6311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 8360 - 8296
Alignment:
Q  4 atacttcaagaaaattaacactgattactcttcattattgtattattataaaagttacaattttt 68  Q
    |||||| |||||||| | || |||||| | ||||||||| | ||||||||||||| |||||||||    
T  8360 atacttgaagaaaataagcattgattatttttcattattatgttattataaaagtcacaattttt 8296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University