View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_high_43 (Length: 239)
Name: NF5565_high_43
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_high_43 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 7774007 - 7773786
Alignment:
| Q |
1 |
catccgactcagattcaagcttggaattgtagattctgcaaaatttgaaaaccacggtgtaccttgtcgagcataaaacaatatgtatgcttcctgagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7774007 |
catccgactcagattcaagcttggaattgtagattctgcaaaatttgaaaaccacggtgtaccttgtcgagcataaaacaatatgtatgcttcctgagac |
7773908 |
T |
|
| Q |
101 |
agcacagtctcttcagataccttagtaaccattgagtcatccaatttatgccaagtatccggagcagtgcgaacgaagcagaaataatgccctgaagtag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7773907 |
agcacagtctcttcagataccttagtaaccattgagtcatccaatttatgccacgtatccggagcagtgcgaacgaagcagaaataatgccctgaagtag |
7773808 |
T |
|
| Q |
201 |
atgaaattccagtatggacaac |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
7773807 |
atgaaattccagtatggacaac |
7773786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 7767872 - 7767651
Alignment:
| Q |
1 |
catccgactcagattcaagcttggaattgtagattctgcaaaatttgaaaaccacggtgtaccttgtcgagcataaaacaatatgtatgcttcctgagac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7767872 |
catccgactcagattcaagcttggaattgtagattctgcaaaatttgaaaaccacggtgtaccttgtcgagcataaaacaatatgtatgcttcctgagac |
7767773 |
T |
|
| Q |
101 |
agcacagtctcttcagataccttagtaaccattgagtcatccaatttatgccaagtatccggagcagtgcgaacgaagcagaaataatgccctgaagtag |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7767772 |
agcacagtctcttcagaaaccttagtaaccattgagtcatccaatttatgccacgtacccggagcagtgcgaacgaagcagaaataatgccctgaagtag |
7767673 |
T |
|
| Q |
201 |
atgaaattccagtatggacaac |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
7767672 |
atgaaattccagtatggacaac |
7767651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 7778819 - 7778620
Alignment:
| Q |
24 |
gaattgtagattctgcaaaatttgaaaaccacggtgtaccttgtcgagcataaaacaatatgtatgcttcctgagacagcacagtctcttcagatacctt |
123 |
Q |
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||||||||||||| ||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7778819 |
gaattgtagattccgcaaaatttgaaaaccagtgagtaccttgtcgggcataaaacaatatgtatgcttcctgagacagcacagtctcttcagataccat |
7778720 |
T |
|
| Q |
124 |
agtaaccattgagtcatccaatttatgccaagtatccggagcagtgcgaacgaagcagaaataatgccctgaagtagatgaaattccagtatggacaact |
223 |
Q |
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|||||||||||| ||||| || |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
7778719 |
agtaaccattgaatcatctaacttatgccatgtatccggagcagtgcgaacgaagctaaaataatgccctgaagtagatgaaaatccagtatgcacaact |
7778620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 12752908 - 12753033
Alignment:
| Q |
1 |
catccgactcagattcaagcttggaattgtagattctgcaaaatttgaaaaccacggtgtaccttgtcgagcataaaacaatatgtatgcttcctgagac |
100 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
12752908 |
catcctactcagattcaagcatggaattgtagattctgcaaaacttgaaaaccaaggtgtgccttgtcgggcataaaacaatatgtatgcttcctgagac |
12753007 |
T |
|
| Q |
101 |
agcacagtctcttcagataccttagt |
126 |
Q |
| |
|
||||||||| |||||||||||||||| |
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|
| T |
12753008 |
agcacagtcccttcagataccttagt |
12753033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 12815868 - 12815993
Alignment:
| Q |
1 |
catccgactcagattcaagcttggaattgtagattctgcaaaatttgaaaaccacggtgtaccttgtcgagcataaaacaatatgtatgcttcctgagac |
100 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
12815868 |
catcctactcagattcaagcatggaattgtagattctgcaaaacttgaaaaccaaggtgtgccttgtcgggcataaaacaatatgtatgcttcctgagac |
12815967 |
T |
|
| Q |
101 |
agcacagtctcttcagataccttagt |
126 |
Q |
| |
|
||||||||| |||||||||||||||| |
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| T |
12815968 |
agcacagtcccttcagataccttagt |
12815993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 12753330 - 12753424
Alignment:
| Q |
128 |
accattgagtcatccaatttatgccaagtatccggagcagtgcgaacgaagcagaaataatgccctgaagtagatgaaattccagtatggacaac |
222 |
Q |
| |
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|||||||| |||||||| |||||||| || || |||||||||||||| ||||||||||||||||| || ||||||| ||||| |||| ||||| |
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| T |
12753330 |
accattgaatcatccaacttatgccatgtgtctggagcagtgcgaacaaagcagaaataatgcccagagtcagatgaagttccattatgcacaac |
12753424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 12816290 - 12816384
Alignment:
| Q |
128 |
accattgagtcatccaatttatgccaagtatccggagcagtgcgaacgaagcagaaataatgccctgaagtagatgaaattccagtatggacaac |
222 |
Q |
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|||||||| |||||||| |||||||| || || |||||||||||||| ||||||||||||||||| || ||||||| ||||| |||| ||||| |
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| T |
12816290 |
accattgaatcatccaacttatgccatgtgtctggagcagtgcgaacaaagcagaaataatgcccagagtcagatgaagttccattatgcacaac |
12816384 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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