View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_high_44 (Length: 239)
Name: NF5565_high_44
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24951954 - 24952174
Alignment:
| Q |
1 |
caaatctaaacagaatttgaaataaaggtttgcaacgacgatttaggtcgcaaaatcaatgtttttgatatctatctgaccgcaactgaggcacatcagt |
100 |
Q |
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| T |
24951954 |
caaatctaaacagaatttgaaataaaggtttgcaacgacgatttaggtcgcaaaatcaatgtttttgatatctatctgaccgcaactgaggcacatcagt |
24952053 |
T |
|
| Q |
101 |
catatttcactacgattcttcacaatattaaggatcatagccagataacaatgtaaaacctagaccttaaagctaaccatttctaaatgcattctcaaaa |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24952054 |
catatttgactacgattcttcacaatattaaggatcataaccagataacaatgtaaaacctagaccttaaagctaaccatttctaaatgcattctcaaaa |
24952153 |
T |
|
| Q |
201 |
ttaaaggaagtctcaccttac |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
24952154 |
ttaaaggaagtctcaccttac |
24952174 |
T |
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