View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5565_high_47 (Length: 238)

Name: NF5565_high_47
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5565_high_47
NF5565_high_47
[»] chr2 (17 HSPs)
chr2 (16-238)||(12051883-12052105)
chr2 (16-231)||(12059311-12059524)
chr2 (16-131)||(12064779-12064894)
chr2 (177-234)||(5573419-5573476)
chr2 (178-234)||(5593184-5593240)
chr2 (177-234)||(12064719-12064776)
chr2 (187-234)||(5576591-5576638)
chr2 (161-218)||(5582735-5582793)
chr2 (178-228)||(5586951-5587001)
chr2 (81-131)||(12070341-12070391)
chr2 (16-88)||(5593002-5593074)
chr2 (16-91)||(5573265-5573340)
chr2 (24-91)||(5576353-5576420)
chr2 (39-86)||(12074614-12074661)
chr2 (21-91)||(5586771-5586841)
chr2 (26-91)||(12054143-12054208)
chr2 (39-87)||(12076017-12076065)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 12052105 - 12051883
Alignment:
Q  16 cataattcacacctttgagaatatctaaaccattagtgtttgcaaatgatggaatgaatatctaaaatccaagaaggcaagctatagtcaaagaaatgac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12052105 cataattcacacctttgagaatatctaaaccattagtgtttgcaaatgatggaatgaatatctaaaatccaagaaggcaagctatagtcaaagaaatgac 12052006  T
Q  116 tttagtttgagttgaagcacaaagagataacaaaaatagttcacaataatatagataaaccgaaagaacgttacttattatgttaattgcagttcgaccg 215  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12052005 tttagtttgagttgaaacacaaagagataacaacaatagttcacaataatatagataaaccgaaagaacgttacttattatgttaattgcagttcgaccg 12051906  T
Q  216 ttggtaaatcttctggttgcgcc 238  Q
    |||||||||||||||||||||||    
T  12051905 ttggtaaatcttctggttgcgcc 12051883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 12059524 - 12059311
Alignment:
Q  16 cataattcacacctttgagaatatctaaaccattagtgtttgcaaatgatggaatgaatatctaaaatccaagaaggcaagctatagtcaaagaaatgac 115  Q
    |||| |||||| || |||| || ||| |||||||||||||||||||||||||||||||| |||||||||||| ||||  ||||  | |||| |||||| |    
T  12059524 catagttcacatctctgagtatgtctgaaccattagtgtttgcaaatgatggaatgaatttctaaaatccaacaaggtgagctgcaatcaatgaaatgtc 12059425  T
Q  116 tttagtttgagttgaagcacaaagagataacaaaaatagttcacaataatatagataaaccgaaagaacgttacttattatgttaattgcagttcgaccg 215  Q
    |||| |||||| |||| |||| | ||||||| ||  ||||||| |||||||||| ||||  ||||||| |||||||||||||| |||||||||||||||     
T  12059424 tttaatttgagctgaaccacacaaagataactaa--tagttcataataatatagttaaattgaaagaatgttacttattatgtcaattgcagttcgacca 12059327  T
Q  216 ttggtaaatcttctgg 231  Q
    ||||||||||||||||    
T  12059326 ttggtaaatcttctgg 12059311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 12064894 - 12064779
Alignment:
Q  16 cataattcacacctttgagaatatctaaaccattagtgtttgcaaatgatggaatgaatatctaaaatccaagaaggcaagctatagtcaaagaaatgac 115  Q
    |||| |||||| ||||||| || ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||    
T  12064894 catatttcacatctttgagtatgtctgaaccattagtgtttgcaaatgatggaatgaatttctaaaatccaagaaggcaagctataatcaatgaaatgac 12064795  T
Q  116 tttagtttgagttgaa 131  Q
    ||||||||||| ||||    
T  12064794 tttagtttgagctgaa 12064779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 5573419 - 5573476
Alignment:
Q  177 gaaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttctggttg 234  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||    
T  5573419 gaaagaatgttacttattatgtcaattgcagttctaccgttggtaaatcttccggttg 5573476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 5593184 - 5593240
Alignment:
Q  178 aaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttctggttg 234  Q
    |||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  5593184 aaagaatgttacttattatgtcaattgtagttcgaccgttggtaaatcttccggttg 5593240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 12064776 - 12064719
Alignment:
Q  177 gaaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttctggttg 234  Q
    ||||||| |||||||||||||| ||||| ||||||||| ||||||||||||| |||||    
T  12064776 gaaagaatgttacttattatgtcaattgtagttcgaccattggtaaatcttccggttg 12064719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 5576591 - 5576638
Alignment:
Q  187 tacttattatgttaattgcagttcgaccgttggtaaatcttctggttg 234  Q
    |||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  5576591 tacttattatgtcaattgaagttcgaccgttggtaaatcttccggttg 5576638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 5582735 - 5582793
Alignment:
Q  161 ataatatagataaaccgaaagaac-gttacttattatgttaattgcagttcgaccgttg 218  Q
    ||||||||||||||  |||||||  |||||||||||||| |||||||||||||||||||    
T  5582735 ataatatagataaattgaaagaattgttacttattatgtcaattgcagttcgaccgttg 5582793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 5586951 - 5587001
Alignment:
Q  178 aaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttc 228  Q
    |||||| |||||| ||||||| ||||| |||||||||||||||||||||||    
T  5586951 aaagaatgttactgattatgtcaattgaagttcgaccgttggtaaatcttc 5587001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 12070391 - 12070341
Alignment:
Q  81 aatccaagaaggcaagctatagtcaaagaaatgactttagtttgagttgaa 131  Q
    ||||||||||||| || | ||||||| ||||||||||||||||||||||||    
T  12070391 aatccaagaaggcgagttgtagtcaatgaaatgactttagtttgagttgaa 12070341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 5593002 - 5593074
Alignment:
Q  16 cataattcacacctttgagaatatctaaaccattagtgtttgcaaatgatggaatgaatatctaaaatccaag 88  Q
    |||| |||||||||||||| || ||| |||||||| |||| ||||||| |||||||||| ||| ||| |||||    
T  5593002 catagttcacacctttgagtatgtctgaaccattaatgttcgcaaatggtggaatgaatttctcaaaaccaag 5593074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 5573265 - 5573340
Alignment:
Q  16 cataattcacacctttgagaatatctaaaccattagtgtttgcaaatgatggaatgaatatctaaaatccaagaag 91  Q
    |||| |||||||||||||| || ||| ||||| |  |||||||||||| |||||||||  ||| ||||||||||||    
T  5573265 catagttcacacctttgagtatgtctgaaccactgatgtttgcaaatggtggaatgaaattctcaaatccaagaag 5573340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 5576353 - 5576420
Alignment:
Q  24 acacctttgagaatatctaaaccattagtgtttgcaaatgatggaatgaatatctaaaatccaagaag 91  Q
    ||||||||||| || ||| |||||||| |||||||||| | |||||||||| ||| ||| ||||||||    
T  5576353 acacctttgagtatgtctgaaccattaatgtttgcaaagggtggaatgaatttctcaaaaccaagaag 5576420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 12074661 - 12074614
Alignment:
Q  39 tctaaaccattagtgtttgcaaatgatggaatgaatatctaaaatcca 86  Q
    ||||||||||||  |||||||||||||| ||||||| |||||||||||    
T  12074661 tctaaaccattatggtttgcaaatgatgaaatgaatttctaaaatcca 12074614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 5586771 - 5586841
Alignment:
Q  21 ttcacacctttgagaatatctaaaccattagtgtttgcaaatgatggaatgaatatctaaaatccaagaag 91  Q
    |||||||||||||| || ||| | |||||| |||||||||||| |||||||||  ||| ||| ||||||||    
T  5586771 ttcacacctttgagtatgtctgagccattaatgtttgcaaatggtggaatgaagttctcaaagccaagaag 5586841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 12054208 - 12054143
Alignment:
Q  26 acctttgagaatatctaaaccattagtgtttgcaaatgatggaatgaatatctaaaatccaagaag 91  Q
    |||||| || || ||||||||||||| |||||||||||||| ||| ||  ||| ||||||||||||    
T  12054208 acctttaagtatgtctaaaccattagggtttgcaaatgatgaaattaaattctcaaatccaagaag 12054143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 12076065 - 12076017
Alignment:
Q  39 tctaaaccattagtgtttgcaaatgatggaatgaatatctaaaatccaa 87  Q
    ||||||||||||| |||||||||||||| ||| ||| ||| ||||||||    
T  12076065 tctaaaccattagggtttgcaaatgatgaaattaatttctcaaatccaa 12076017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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