View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_high_54 (Length: 213)
Name: NF5565_high_54
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_high_54 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 45543259 - 45543056
Alignment:
| Q |
10 |
agatgaagttgaagtaatctcttctggaacaaaagttgataaaactctccctcttgaaaataaaaatgatgaaacttctaagcttggtaatgatggaact |
109 |
Q |
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| T |
45543259 |
agatgaagttgaagtaatctcttctggaacaaaagttgataaaactctccctcttgaaaataaaaatgatgaaacttctaagctcagtaatgatggaact |
45543160 |
T |
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| Q |
110 |
agcattggtagtaatgagggaactgaaacaaaaaatggagacaaaggggcttctgtgaaggactatttggctgagaagctaaggcctagtgaagaagata |
209 |
Q |
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| T |
45543159 |
agcattggtagtaatgagggaactgaaacaaaaaatggagacaaaggggcttctgtgaaggactatctggctgagaagctaaggcctagtgaagaagata |
45543060 |
T |
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| Q |
210 |
aggc |
213 |
Q |
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|||| |
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| T |
45543059 |
aggc |
45543056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 45530260 - 45530165
Alignment:
| Q |
118 |
tagtaatgagggaactgaaacaaaaaatggagacaaaggggcttctgtgaaggactatttggctgagaagctaaggcctagtgaagaagataaggc |
213 |
Q |
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| T |
45530260 |
tagtaatgagggaactgaaacaaaaaatcgagataaaggggctactgtgaaagactatttggctgagaagctaaggcctagtgaagaagataaggc |
45530165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 134
Target Start/End: Complemental strand, 45543790 - 45543672
Alignment:
| Q |
10 |
agatgaagttgaagtaatctcttctggaacaaaagttgataaaactctccctcttgaaaataaaaatgatgaaacttctaagcttggtaatgatggaact |
109 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||| ||| |
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| T |
45543790 |
agatgaagttgatgtaatctcttctggaacaaaagttgataaaactctcccttttg------aaaatgatgaaacttctaagctcagtaatgatggtact |
45543697 |
T |
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| Q |
110 |
agcattggtagtaatgagggaactg |
134 |
Q |
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|||| |||||||||||||||||||| |
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| T |
45543696 |
agcactggtagtaatgagggaactg |
45543672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 45548470 - 45548378
Alignment:
| Q |
121 |
taatgagggaactgaaacaaaaaatggagacaaaggggcttctgtgaaggactatttggctgagaagctaaggcctagtgaagaagataaggc |
213 |
Q |
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| T |
45548470 |
taatgacggaactgaaacaaaaaatggggacaaaggggtcactgtgaaggattacttggccgagaagctaaagcctagtgaagaagataaggc |
45548378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 7005781 - 7005826
Alignment:
| Q |
162 |
ctgtgaaggactatttggctgagaagctaaggcctagtgaagaaga |
207 |
Q |
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| T |
7005781 |
ctgtgaaggactgtttggctgagtaactaaggcctagtgaagaaga |
7005826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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