View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5565_high_9 (Length: 449)

Name: NF5565_high_9
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5565_high_9
NF5565_high_9
[»] chr1 (10 HSPs)
chr1 (21-439)||(48585378-48585796)
chr1 (21-439)||(48639951-48640369)
chr1 (21-259)||(48661603-48661841)
chr1 (21-261)||(48667198-48667438)
chr1 (42-259)||(48618046-48618263)
chr1 (42-259)||(48653192-48653409)
chr1 (43-259)||(48628939-48629155)
chr1 (135-257)||(11547396-11547518)
chr1 (333-408)||(48653483-48653558)
chr1 (332-394)||(48661896-48661958)
[»] chr8 (1 HSPs)
chr8 (42-188)||(27228239-27228385)
[»] chr3 (2 HSPs)
chr3 (96-259)||(19665402-19665565)
chr3 (333-431)||(19665230-19665328)


Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 21 - 439
Target Start/End: Original strand, 48585378 - 48585796
Alignment:
Q  21 aagaactctagaagggatgagttgaacatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaaca 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585378 aagaactctagaagggatgagttgaacatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaaca 48585477  T
Q  121 gcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  48585478 gcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggaaaaaaataattgtttatgatacatgaaaatg 48585577  T
Q  221 gtttgtttaaatcagcatgattcttgataatttgagaaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaaggctgaacg 320  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585578 gtttgtttaaatcagcatgattcttgatcatttgagaaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaaggctgaacg 48585677  T
Q  321 atcaccgtctggtaaaccatcatcaaagaactcgaaagagaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatg 420  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585678 atcaccgtctggtaaaccatcatcaaagaactcgaaagcgaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatg 48585777  T
Q  421 tttttgccagccgtctctg 439  Q
    |||||||||||||||||||    
T  48585778 tttttgccagccgtctctg 48585796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 21 - 439
Target Start/End: Original strand, 48639951 - 48640369
Alignment:
Q  21 aagaactctagaagggatgagttgaacatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaaca 120  Q
    ||||||| ||||||   |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48639951 aagaactatagaagaattgagttgaacatcaatataaggttcttcatttgtagggaaagatgttaatttgtggacatagttatagtaagtggtgaaaaca 48640050  T
Q  121 gcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatg 220  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||       || ||||||||||||||||||||||    
T  48640051 gcagcggaattagtccatgacaaaacagaaggaatattgtgttcattagcaacgtcacaaacccatggaaaaaaatagttgtttatgatacatgaaaatg 48640150  T
Q  221 gtttgtttaaatcagcatgattcttgataatttgagaaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaaggctgaacg 320  Q
    |||||||| |||| ||||||||||| || ||||| |||||| || |||| ||||||||||||||||||||  |||||||||||||||||||||| ||||     
T  48640151 gtttgtttgaatcggcatgattctttatcatttgtgaaataaagtgtctgccagcaacctcaatttcagcatagtgctgaagagctctgaaggccgaacc 48640250  T
Q  321 atcaccgtctggtaaaccatcatcaaagaactcgaaagagaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatg 420  Q
    |   || |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48640251 actgccatctggtaaaccatcgtcaaagaactcgaaagcgaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatg 48640350  T
Q  421 tttttgccagccgtctctg 439  Q
    |||||||||||||||||||    
T  48640351 tttttgccagccgtctctg 48640369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 21 - 259
Target Start/End: Original strand, 48661603 - 48661841
Alignment:
Q  21 aagaactctagaagggatgagttgaacatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaaca 120  Q
    ||||||| |||||| | |||||||||||||||| ||||||||||||||||  |||||||||   |||||||||||||||| |||| ||  ||  |||||     
T  48661603 aagaactatagaagagttgagttgaacatcaatgtaaggttcttcatttgatgggaaaggtaccaatttgtggacatagtcatagcaaacggcaaaaact 48661702  T
Q  121 gcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatg 220  Q
    |||  ||||||||||||| ||||| ||||||||||||||||||||  ||| | |||||||||||||||         ||||||||||| |||||||| ||    
T  48661703 gcactggaattagtccataataaagcagaaggaatattgtgttcaaaagctatatcacaaacccatggaagaaatggattgtttatgacacatgaaattg 48661802  T
Q  221 gtttgtttaaatcagcatgattcttgataatttgagaaa 259  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  48661803 gtttgtttgaatcagcatgattcttgatcatttgagaaa 48661841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 21 - 261
Target Start/End: Original strand, 48667198 - 48667438
Alignment:
Q  21 aagaactctagaagggatgagttgaacatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaaca 120  Q
    ||||||| |||||| | ||||||||||||||||||||||||||||||||| ||||||||||   |||||||||||||| | |||| || |||||||||||    
T  48667198 aagaactatagaagagttgagttgaacatcaatataaggttcttcatttgaagggaaaggtaacaatttgtggacataatcatagcaaatggtgaaaaca 48667297  T
Q  121 gcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatg 220  Q
    |||   |||||||||||| | ||| ||||||||||||||||||||  ||| | ||||| |||||||||          |||||||| |||||||||| ||    
T  48667298 gcactagaattagtccataacaaagcagaaggaatattgtgttcaaaagctatatcactaacccatggaaaaaaagggttgtttataatacatgaaattg 48667397  T
Q  221 gtttgtttaaatcagcatgattcttgataatttgagaaata 261  Q
    |||||||  |||||||||||||||| || ||||||||||||    
T  48667398 gtttgttcgaatcagcatgattctttatcatttgagaaata 48667438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 42 - 259
Target Start/End: Complemental strand, 48618263 - 48618046
Alignment:
Q  42 ttgaacatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgat 141  Q
    ||||||||||||||||||||||   | || ||||||| ||   | |||||||| ||||||||||||||  |  ||||||||||  || | | ||||| |     
T  48618263 ttgaacatcaatataaggttctgtttgtgaagggaaacgtaccagtttgtggaaatagttatagtaagcagaaaaaacagcagttgattgaatccataac 48618164  T
Q  142 aaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgat 241  Q
    ||| |||||||||||   ||||||| ||| |||||||||||||||||         ||||||||||||||||||||||||||||||| ||||||||||||    
T  48618163 aaagcagaaggaataccatgttcatcagctacatcacaaacccatggaacaaaaggattgtttatgatacatgaaaatggtttgtttgaatcagcatgat 48618064  T
Q  242 tcttgataatttgagaaa 259  Q
    ||||||| ||||||||||    
T  48618063 tcttgatcatttgagaaa 48618046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 42 - 259
Target Start/End: Original strand, 48653192 - 48653409
Alignment:
Q  42 ttgaacatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgat 141  Q
    ||||||||||||||||||||||||||||| ||||||| ||   | |||||||| |||||| ||||||| ||| | |||||| | ||| | |  |||| ||    
T  48653192 ttgaacatcaatataaggttcttcatttgaagggaaacgtaccagtttgtggaaatagttgtagtaagcggtaagaacagcggtggattgaacccataat 48653291  T
Q  142 aaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgat 241  Q
    |||||||||||||||   ||||||| ||| |||||||||||||| ||         ||| ||||||| |||||||| |||||||||| | ||||||||||    
T  48653292 aaaacagaaggaataccatgttcatcagctacatcacaaacccaaggaagaaagggattatttatgagacatgaaattggtttgtttgactcagcatgat 48653391  T
Q  242 tcttgataatttgagaaa 259  Q
    ||||||| ||||||||||    
T  48653392 tcttgatcatttgagaaa 48653409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 43 - 259
Target Start/End: Original strand, 48628939 - 48629155
Alignment:
Q  43 tgaacatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgata 142  Q
    |||||||||||||||||||||   | || ||| ||||||   | |||||||||||||||||||||||||| ||||||||||   |||||| |||||||||    
T  48628939 tgaacatcaatataaggttctgtttctgaaggaaaaggtacaagtttgtggacatagttatagtaagtggcgaaaacagcactagaattattccatgata 48629038  T
Q  143 aaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgatt 242  Q
    || |||||||||| |  ||||||  ||| ||||| |||||||||||         ||||| |||||||||||||| ||||||  || |||||||||||||    
T  48629039 aagcagaaggaatgtcatgttcaaaagctacatcgcaaacccatggaagaaaaggattgtatatgatacatgaaattggtttacttgaatcagcatgatt 48629138  T
Q  243 cttgataatttgagaaa 259  Q
    |||||| |||| |||||    
T  48629139 cttgatcattttagaaa 48629155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 257
Target Start/End: Original strand, 11547396 - 11547518
Alignment:
Q  135 ccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatca 234  Q
    |||| |||||||||||||||||   ||||||| ||| |||||||||||||| ||         ||||||||||||||| |||| |||||||||| | |||    
T  11547396 ccataataaaacagaaggaataccatgttcatgagctacatcacaaacccaaggaacaaaaggattgtttatgatacaagaaattggtttgtttgactca 11547495  T
Q  235 gcatgattcttgataatttgaga 257  Q
     ||||||||||||| ||||||||    
T  11547496 acatgattcttgatcatttgaga 11547518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 408
Target Start/End: Original strand, 48653483 - 48653558
Alignment:
Q  333 taaaccatcatcaaagaactcgaaagagaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgtta 408  Q
    ||||| ||||||||||||||| |||| ||  | ||||||||||||||||||   | |||| |||||||||||||||    
T  48653483 taaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgtta 48653558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 394
Target Start/End: Original strand, 48661896 - 48661958
Alignment:
Q  332 gtaaaccatcatcaaagaactcgaaagagaaagtaccatcaccaattggagttgctaatttgt 394  Q
    |||||| || ||||||||||||||||  || || ||||||||| || ||||||||||||||||    
T  48661896 gtaaactatgatcaaagaactcgaaaatgagagaaccatcacctatcggagttgctaatttgt 48661958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 188
Target Start/End: Original strand, 27228239 - 27228385
Alignment:
Q  42 ttgaacatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgat 141  Q
    |||||||||||||||||||||| |||| | ||||||| ||   | |||||| | ||||||||||||||  | |||||||||| |||| | | ||||| ||    
T  27228239 ttgaacatcaatataaggttctgcattcgaagggaaacgtaccagtttgtgaaaatagttatagtaagctgcgaaaacagcaccggattgaatccataat 27228338  T
Q  142 aaaacagaaggaatattgtgttcattagcaacatcacaaacccatgg 188  Q
    ||| |||||||||| | | |||||  ||| ||||||| |||||||||    
T  27228339 aaagcagaaggaatctcgagttcagcagctacatcactaacccatgg 27228385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 259
Target Start/End: Complemental strand, 19665565 - 19665402
Alignment:
Q  96 atagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnn 195  Q
    ||||||||||||||  ||||||||||||| ||| | | ||||| | ||| ||||||||||||  |||| |  ||| |||||||||||||||||           
T  19665565 atagttatagtaagcagtgaaaacagcagtggattgaatccataacaaagcagaaggaatatcatgttgagaagctacatcacaaacccatggaagaaaa 19665466  T
Q  196 taattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttgagaaa 259  Q
      |||||||||||| || ||||  ||||||||| | |||  ||||||||| || ||||||||||    
T  19665465 ggattgtttatgatgcaagaaataggtttgtttgactcattatgattcttaatcatttgagaaa 19665402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 431
Target Start/End: Complemental strand, 19665328 - 19665230
Alignment:
Q  333 taaaccatcatcaaagaactcgaaagagaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagc 431  Q
    |||||||||||||||||| | ||||  || || ||||||||| ||||||||   | |||||| | ||||||||||| ||| | |||||| |||||||||    
T  19665328 taaaccatcatcaaagaagtggaaaatgagagaaccatcacctattggagtgagtgatttgtgagtgatgttgttaacagtttgcatgtctttgccagc 19665230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University