View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5565_low_14 (Length: 437)

Name: NF5565_low_14
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5565_low_14
NF5565_low_14
[»] chr4 (2 HSPs)
chr4 (1-407)||(56539815-56540240)
chr4 (87-135)||(23992450-23992498)
[»] chr1 (2 HSPs)
chr1 (191-407)||(32791308-32791540)
chr1 (27-156)||(48183395-48183524)
[»] chr2 (2 HSPs)
chr2 (27-181)||(25124768-25124920)
chr2 (76-141)||(7768800-7768865)
[»] chr7 (3 HSPs)
chr7 (31-178)||(20266702-20266846)
chr7 (122-181)||(20249946-20250005)
chr7 (26-62)||(1483562-1483598)
[»] chr8 (4 HSPs)
chr8 (105-175)||(28940854-28940924)
chr8 (126-181)||(31164452-31164507)
chr8 (27-62)||(31166094-31166129)
chr8 (27-68)||(31164352-31164393)
[»] chr5 (1 HSPs)
chr5 (28-60)||(19365671-19365703)


Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 56540240 - 56539815
Alignment:
Q  1 aaaatacaaacaacactgtttttcatgttttttaaattctttgttatatgtttgaatgagttgcatttnnnnnnntttgtttactgctaaaacttattat 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  56540240 aaaatacaaacaacactatttttcatgttttttaaattctttgttatatgtttgaatgagttgcatttaaaaaaatttgtttactgctaaaacttattat 56540141  T
Q  101 tatttgaacttgaatcactactaaaatgataaactgtcaaattcataggtttataacttaaaaaggagagaataaatagatggatagaagaatgcctgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56540140 tatttgaacttgaatcactactaaaatgataaactgtcaaattcataggtttataacttaaaaaggagagaataaatagatggatagaagaatgcctgat 56540041  T
Q  201 atagatggattcgaggtcgccgcaaggattaggaagtttaaaagcggaaataggcctataattgttgcc-------------------aagatctgtgtg 281  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||                   ||||||||||||    
T  56540040 atagatggattcgaggtcgccgcaaggattcggaagtttaaaagcggaaataggcctataattgttgccttgattgcaagtgcagaagaagatctgtgtg 56539941  T
Q  282 tgggaaaggttatgcagattggtgttaatggtgtaatccgaaaacccgttttgatgcaaggaattgctagtgaacttagaagaattctgatgcaaggaaa 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56539940 tgggaaaggttatgcagattggtgttaatggtgtaatccgaaaacccgttttgatgcaaggaattgctagtgaacttagaagaattctgatgcaaggaaa 56539841  T
Q  382 tatttgaaaaatggatggtgcaagtt 407  Q
    ||||||||||||||||||||||||||    
T  56539840 tatttgaaaaatggatggtgcaagtt 56539815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 23992450 - 23992498
Alignment:
Q  87 ctaaaacttattattatttgaacttgaatcactactaaaatgataaact 135  Q
    ||||||||||||| ||||||||| ||| || ||||||||| ||||||||    
T  23992450 ctaaaacttattagtatttgaacatgagtcgctactaaaacgataaact 23992498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 191 - 407
Target Start/End: Original strand, 32791308 - 32791540
Alignment:
Q  191 aatgcctgatatagatggattcgaggtcgccgcaaggattaggaagtttaaaagcggaaataggcctataattgttgcc--------aagatctg----- 277  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||        |||  | |         
T  32791308 aatgcctgatatagatggattcgaagtcgccgcaaggattcggaagtttaaaagcggaaataggcctataattgttgccttgactgcaagtgcagaagaa 32791407  T
Q  278 --tgtgtgggaaaggt-tatgcagattggtgttaatggtgtaatccgaaaacccgttttgatgcaaggaattgctagtgaacttagaagaattctgatgc 374  Q
      | ||||||||| || ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  32791408 gatttgtgggaaaagtgtatgcagattggtgttaatggagtaatccgaaaaccggttttgatgcaaggaattgctagtgaactcagaagaattctgatgc 32791507  T
Q  375 aaggaaatatttgaaaaatggatggtgcaagtt 407  Q
    | |||||| ||||||||||||||||||||||||    
T  32791508 agggaaatctttgaaaaatggatggtgcaagtt 32791540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 48183395 - 48183524
Alignment:
Q  27 gttttttaaattctttgttatatgtttgaatgagttgcatttnnnnnnntttgtttactgctaaaacttattattatttgaacttgaatcactactaaaa 126  Q
    |||||| |||||||||||||||||||| ||||||||  ||||        ||||||| ||||||||||||||| |||||||||||||||| |||||||||    
T  48183395 gtttttgaaattctttgttatatgtttaaatgagttatattttaaaaaaattgtttattgctaaaacttattagtatttgaacttgaatcgctactaaaa 48183494  T
Q  127 tgataaactgtcaaattcataggtttataa 156  Q
    || |||||||||||||||| ||| ||||||    
T  48183495 tgttaaactgtcaaattcacaggcttataa 48183524  T

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Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 25124768 - 25124920
Alignment:
Q  27 gttttttaaattctttgttatatgtttgaatgagttgcatttnnnnnnntttgtttactgctaaaacttattattatttgaacttgaatcactactaaaa 126  Q
    ||||||| |||||||||||||||  |||||||||||| ||||        ||||||||||||||||||||||||||||||||||||| || ||| |||||    
T  25124768 gtttttttaattctttgttatataattgaatgagttgtatttaaaaaaaattgtttactgctaaaacttattattatttgaacttgagtcgctattaaaa 25124867  T
Q  127 tgataaactgtcaaattcataggtttataacttaaaaaggagagaataaatagat 181  Q
     |||||| |||||||||||||||||||||  ||||||||||||||| ||||||||    
T  25124868 cgataaattgtcaaattcataggtttata--ttaaaaaggagagaacaaatagat 25124920  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 7768800 - 7768865
Alignment:
Q  76 tttgtttactgctaaaacttattattatttgaacttgaatcactactaaaatgataaactgtcaaa 141  Q
    |||||| | ||||||||||||||| ||||||||| ||| ||  |||||||| |||||||| |||||    
T  7768800 tttgttaattgctaaaacttattagtatttgaacctgagtcgttactaaaacgataaactatcaaa 7768865  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 20266846 - 20266702
Alignment:
Q  31 tttaaattctttgttatatgtttgaatgagttgcatttnnnnnnntttgtttactgctaaaacttattattatttgaacttgaatcactactaaaatgat 130  Q
    |||||||||||||||| |||||| ||||||||| ||||       || ||||| |  ||||| |||||| |||||||||||||||| ||||||||| |||    
T  20266846 tttaaattctttgttacatgtttaaatgagttgtatttaaaaaaatt-gtttattattaaaatttattagtatttgaacttgaatcgctactaaaacgat 20266748  T
Q  131 aaactgtcaaattcataggtttataacttaaaaaggagagaataaata 178  Q
    |||| |||||||||| |  |||||||  ||||||||||||||||||||    
T  20266747 aaaccgtcaaattcaca--tttataaactaaaaaggagagaataaata 20266702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 20250005 - 20249946
Alignment:
Q  122 taaaatgataaactgtcaaattcataggtttataacttaaaaaggagagaataaatagat 181  Q
    ||||| |||||||||||||||||| | ||||||||  ||||||| |||||||||||||||    
T  20250005 taaaacgataaactgtcaaattcacatgtttataaactaaaaagaagagaataaatagat 20249946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 1483598 - 1483562
Alignment:
Q  26 tgttttttaaattctttgttatatgtttgaatgagtt 62  Q
    ||||||||||||||| | |||||||||||||||||||    
T  1483598 tgttttttaaattctatattatatgtttgaatgagtt 1483562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 28940854 - 28940924
Alignment:
Q  105 tgaacttgaatcactactaaaatgataaactgtcaaattcataggtttataacttaaaaaggagagaataa 175  Q
    ||||||||| |  ||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28940854 tgaacttgagttgctattaaaacgataaactgtcaaattcataggtttataaattaaaaaggagagaataa 28940924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 31164452 - 31164507
Alignment:
Q  126 atgataaactgtcaaattcataggtttataacttaaaaaggagagaataaatagat 181  Q
    |||||||||||||||||||| ||||||||||  |||||||||||| ||||||||||    
T  31164452 atgataaactgtcaaattcacaggtttataaactaaaaaggagaggataaatagat 31164507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 62
Target Start/End: Complemental strand, 31166129 - 31166094
Alignment:
Q  27 gttttttaaattctttgttatatgtttgaatgagtt 62  Q
    ||||||||||||||||||||||||||||||||||||    
T  31166129 gttttttaaattctttgttatatgtttgaatgagtt 31166094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 31164352 - 31164393
Alignment:
Q  27 gttttttaaattctttgttatatgtttgaatgagttgcattt 68  Q
    |||||||||||| |||||||||||||||||||||||| ||||    
T  31164352 gttttttaaattatttgttatatgtttgaatgagttgtattt 31164393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 19365703 - 19365671
Alignment:
Q  28 ttttttaaattctttgttatatgtttgaatgag 60  Q
    |||||||||||||||||| ||||||||||||||    
T  19365703 ttttttaaattctttgttgtatgtttgaatgag 19365671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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