View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_low_17 (Length: 395)
Name: NF5565_low_17
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 28667116 - 28667498
Alignment:
| Q |
1 |
tacaattgttatctaattttattatccttttattacaatttgatcatacaaaattctttgatttaattttaaggatgctagcataaaagacaaacaaatg |
100 |
Q |
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| T |
28667116 |
tacaattgttatctaattttattatccatttattacaatttgatcatacaaaattctatgatttaattttaaggatgctagc-taaaagacaaacaaatg |
28667214 |
T |
|
| Q |
101 |
ttcgatcttagctatgagaggtgtatgcatttagtgtacgaccatgaactcatgcctcgaacaaaattactcatatagtctagcggaagagatcagtctc |
200 |
Q |
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| T |
28667215 |
ttcgatcttagctatgagaggtgtatgcatttagtgtacgaccatgaactcgtgcctcgaacaaaattactcatatggtctagcggaagagatcagtctc |
28667314 |
T |
|
| Q |
201 |
ccatagcataacgaagaaacaaatgttcgatctaaactgtgagaggtgtatatatttaatgtttgatcatgccttaaacaaaattaccgcctagtagcat |
300 |
Q |
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| T |
28667315 |
ccatagcataacgaacgaacaaatgttcgatctaaactgtgagaggtgtatatatttagtgtttgatcatgcctcaaacaaaattaccgcctagtaacat |
28667414 |
T |
|
| Q |
301 |
agaagnnnnnnnnttacaagtatacttgccttatttgttgccaaagtagcaccactaacacccattttacccaatgctttctctg |
385 |
Q |
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| T |
28667415 |
agaag-aaaaaaattacaagtgtacttgccttatttgttgccaaagtagcaccactaacacccatattacccaatgctttctctg |
28667498 |
T |
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