View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_low_19 (Length: 368)
Name: NF5565_low_19
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 4839381 - 4839027
Alignment:
| Q |
17 |
cttctcttcctgcatcatcaaactatcacatctatcacactactcacttttcnnnnnnnn----ctctttgttttcaagctgcatgtacacccctcatga |
112 |
Q |
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| T |
4839381 |
cttctcttactacatcatcaaactatcacatctatcacactactcacttttgtcttttttttttctctttgttttcaagctgcatgtacacccatcatga |
4839282 |
T |
|
| Q |
113 |
gatgtacacaaaacattttccaattaggcatatgatattctacacatttacctctatttctttcttac-tttttatcttctaaaacttaaaagtatttta |
211 |
Q |
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| T |
4839281 |
gatgtacacaaaacattttccaattaggtatatgatattctacacatttacctctatttctttcttacctttttatcttctaaaacttaaaagtatttta |
4839182 |
T |
|
| Q |
212 |
aaaatacacatactaaaaacttaaggaattgtattttacaccaaaattttaaagtcaaagtattatttctcat-tgaaatatactcttccatgcacgtaa |
310 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
4839181 |
aaaatacacatactaaaaactaaaggaattgtattttacaccaaaattttaaagtcaaagtattatttctcatattgaatatactcttccatgcacgtaa |
4839082 |
T |
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| Q |
311 |
gtactacataaaatttgttgcttcatttgtctattgttcgtgtttatagtttctt |
365 |
Q |
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| T |
4839081 |
gtactacataaaatttgttgcttcatttgtctattgtttgtgtttatagtttctt |
4839027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 34950957 - 34950899
Alignment:
| Q |
165 |
tctatttctttcttactttttatcttctaaaacttaaaagtattttaaaaatacacata |
223 |
Q |
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| T |
34950957 |
tctatttatttcttatattttattttctacaacttaaaagtatttaaaaaatacacata |
34950899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 33844144 - 33844212
Alignment:
| Q |
153 |
tacacatttacctctatttctttcttactttttatcttctaaaacttaaaagtattttaaaaatacaca |
221 |
Q |
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| T |
33844144 |
tacacgtttatctctatctctctcttactatttatctcctacaacttaaatgcatttcaaaaatacaca |
33844212 |
T |
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