View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5565_low_20 (Length: 352)
Name: NF5565_low_20
Description: NF5565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5565_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 31585903 - 31585554
Alignment:
| Q |
1 |
cttctcttccaatcctctccgatttctgatccatgcttcttaatacttcttttaaggacaatcctttgaggctatagtgcaaataaatgtgtattcagaa |
100 |
Q |
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| T |
31585903 |
cttctcttccaatcctctcctatttctgatccatgcttcttaatacttcttttaaggacaatcctttgaggctatagtgcaaataaatgtgtaatcagaa |
31585804 |
T |
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| Q |
101 |
ttggtttaatttcaagtgtatcttgattctatgctattaaaatttaagtttgattggtgtacccttatttctcacttagaaaacaaactcagtttagaga |
200 |
Q |
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| T |
31585803 |
ttgatttaatttcaagtgtatcttgattctatgctattaaaatttaagtttgattggtgtacccttatttctcacttagaaaacaaactcagtttagaga |
31585704 |
T |
|
| Q |
201 |
gtttttatttttcttgtttaatgcgtgtgtattaagatagagttttatgggaaaattctttgcaggcattttggaatgaattgggcatttgttgatccaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31585703 |
gtttttatttttcttgtttaatgcgtgtgtattaagatagagttttatgggaaaattctttgcaggcattttggaatgaattgggcatttgttgatccaa |
31585604 |
T |
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| Q |
301 |
aaacaccggtcgaacaaggagcaaagttttgtgtttgtgtcaaagagttc |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31585603 |
aaacaccggtcgaacaaggagcaaagttttgtgtttgtgtcaaagagttc |
31585554 |
T |
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